PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G35730.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 457aa    MW: 48345.1 Da    PI: 7.3462
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G35730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.54.8e-34137247189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++    +   +  + a++++ +a ++  +   
  ONIVA01G35730.1 137 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 227
                      689**************************************************************5441...3222111222111111111223 PP

              TCP  89 ...................k 89 
                                         +
  ONIVA01G35730.1 228 gfgnttggtmtsaasaaagS 247
                      34445555554444333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-31139256IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971140198IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSGFTNKDGR QNLAPCFNFR SSPFRLTVGE RELKLEEDKN QLSKGLDPWT SNPTASASTL  60
HYLLQEKERA QQAHEQLQIY QQQQGFGSFL QHRIRQPASR GPGGGGGGGD GGGSSGESTP  120
VDALATAFGA GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP  180
SKAVDWLMRN AKAAIDELPD RAEAPPPPAA ASTEQPEATE QATSTSYGFG NTTGGTMTSA  240
ASAAAGSFLP HSLGADRVSD SVKSLFPSSS TASGAASAGH DEYRGSPPDL LSRTTSNQQP  300
QELCLTLQSN QHQIFSHVSS NHHGMISSAG VPGWPDHSQR MQAWHAPENS TGDGRGGGNG  360
DGYMFAMPSR QGLDQSQLFS HGEPLQSSGR GWASARAWLD PLPVAAIHHQ PSTMAAGQVG  420
FGHLVGGAGG GGGFMGFLAP AAQRLEGEEE HGSEVIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20145199155Putative transcription factor PCF6
5zkt_B4e-20145199155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639296.10.0transcription factor PCF7
SwissprotA2WV680.0PCF7_ORYSI; Transcription factor PCF7
TrEMBLA0A0E0FTB10.0A0A0E0FTB1_ORYNI; Uncharacterized protein
STRINGONIVA01G35730.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-37TCP family protein