PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G28940.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 562aa    MW: 58550.7 Da    PI: 8.6603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G28940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33352409259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  ONIVA01G28940.1 352 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 409
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-35336411IPR003657WRKY domain
SuperFamilySSF1182901.96E-29343411IPR003657WRKY domain
PROSITE profilePS5081132.535346411IPR003657WRKY domain
SMARTSM007742.6E-39351410IPR003657WRKY domain
PfamPF031063.3E-26352409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGVAVHWRRA GDPLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG  60
PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV  120
TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSAATA KNHEHGQRRR EAAVDPAMSG  180
EYQFQDELAP LFARPGGGAG EMQMLPSSWF ADYLQAGTPM QMDYDLMCRA LELPVGEDVK  240
REVGVVDVVA AGGGGAPPLT PNTTSSMSTS SSEGVGGGGG GGAGAGAGEE ESPARCKKEE  300
DENKEEGKGE EDEGHKNKKG SAAKGGKAGK GEKRARQPRF AFMTKSEVDH LEDGYRWRKY  360
GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TYEGKHTHPI PATLRGSTHL  420
LAAHAQASAA AAAAQQLHHH HGHHGHHGMA PPLPLGSGAA AQFGRSSGID VLSSFLPRAA  480
AAHHGMTTMG GAAATTTTSH GLNSAISGGG GVSSETTSAV TVAASAQPSS PAALQMQHFM  540
AQDLGLLQDM LLPSFIHGTN QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27342412878Probable WRKY transcription factor 4
2lex_A3e-27342412878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640235.10.0uncharacterized protein LOC4326856 isoform X1
TrEMBLA0A0E0FQN10.0A0A0E0FQN1_ORYNI; Uncharacterized protein
STRINGONIVA01G28940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-47WRKY DNA-binding protein 71