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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA01G27030.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 228aa MW: 25501.6 Da PI: 7.1469 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA01G27030.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++lv ++ q G g+W+ ar g++R +k+c++rw++yl
ONIVA01G27030.1 16 KGPWTLEEDLILVSYISQNGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63
79********************************************97 PP
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2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+eEd + +++ ++G++ W++Ia++++ gRt++++k++w++
ONIVA01G27030.1 69 RGSITPEEDMVIRELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
7889******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MATRMCGRAG EPAVRKGPWT LEEDLILVSY ISQNGEGSWD NLARSAGLNR NGKSCRLRWL 60 NYLRPGVRRG SITPEEDMVI RELHSRWGNR WSKIAKHLPG RTDNEIKNYW RTKIHRKPRG 120 RSQLLQEPRE DAMGMGMSTT TSEAASTSAS SGQSQASPGV WDEYMQASSF PHPELVSFAA 180 DHHLEMAGVG EVAAAAAAQF VPTEFGFNDG FWNFVDNFWE TMPVSDVV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003607 | 0.0 | AP003607.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004A09. |
GenBank | AP004367 | 0.0 | AP004367.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696E01. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |