PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G26290.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 344aa    MW: 36352.1 Da    PI: 6.1805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G26290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.7e-27173231259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  ONIVA01G26290.1 173 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 231
                      799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377167233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27168233IPR003657WRKY domain
SuperFamilySSF1182901.22E-24170233IPR003657WRKY domain
SMARTSM007741.6E-32172232IPR003657WRKY domain
PfamPF031061.1E-22174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP  60
ARAPDGPDQM ARASASALYD LEYLDLDHKP FLLPGSSSSR AVARARGEDD GKGRHEVMIS  120
FPAAAAASTS GAQPRSPSGR KPGIRTPRPK RSKKSQLKKV VYEVPVADGG VSSDLWAWRK  180
YGQKPIKGSP YPRGYYKCSS MKGCMARKMV ERSPAKPGML VVTYMAEHCH PVPTQLNALA  240
GTTRHKSAPT GDDDKPTSPG PAAGRAAAGE GVVKCEDVDG NELSAMAADG GAEDTAAAVD  300
DDGELWPEGM GLELDEFLGP MDDDVFEFDH VLEDDGVLGR RLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21154234280Disease resistance protein RRS1
5w3x_D4e-21154234280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.10.0WRKY transcription factor 22
TrEMBLA0A0E0FPP90.0A0A0E0FPP9_ORYNI; Uncharacterized protein
STRINGONIVA01G26290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-40WRKY family protein