PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G19020.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 444aa MW: 48471.1 Da PI: 6.228

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G19020.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.7e-11	157	188	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 ++ k rr+++NReAAr+sR+RKka+i++Le ONIVA01G19020.2 157 EQHKTMRRLAQNREAARKSRLRKKAYIQQLES 188 677999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-8	153	196	No hit	No description
Pfam	PF00170	1.1E-8	157	189	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.668	158	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-7	160	193	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.0E-29	239	313	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MGEASSSSGH PRQNPHVLGY GFHGAMPNSL LSANLFEQQG GANYFGELEE ALMQQVATLR 60 RTQQTATTTS TLHHGDTTPF STTATAAATA RPPPTLDIFP SWPMRSLHTP KEGSNVTADT 120 TDSESSSKNN SNQNASSDQH VLVGDMAGQF DQIPQQEQHK TMRRLAQNRE AARKSRLRKK 180 AYIQQLESSK LKLAQMEQDI HRARSQGLLL GAPGGNTSSG AAMFDVDYAR WLEEDSRRMA 240 ELHGGLHARL PDSDLRAIVD DTLTHYDHLF NLKGMAAKAD VFHLITGMWA TPAERCFLWM 300 GGFRPSELLK TLTPQLDPLT EQQVVGICNL QQSSQQAEEA LSQGLDQLHQ SLAETVAGGS 360 PLDDPNVGSF MGHMAIALGQ LSNLEGFVIQ AARCFLAIGE YHNRLRALSS LWASRPREIL 420 VADEGNCGEL SIAAHPSESQ YSAF

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MGEASSSSGH PRQNPHVLGY GFHGAMPNSL LSANLFEQQG GANYFGELEE ALMQQVATLR  60
RTQQTATTTS TLHHGDTTPF STTATAAATA RPPPTLDIFP SWPMRSLHTP KEGSNVTADT  120
TDSESSSKNN SNQNASSDQH VLVGDMAGQF DQIPQQEQHK TMRRLAQNRE AARKSRLRKK  180
AYIQQLESSK LKLAQMEQDI HRARSQGLLL GAPGGNTSSG AAMFDVDYAR WLEEDSRRMA  240
ELHGGLHARL PDSDLRAIVD DTLTHYDHLF NLKGMAAKAD VFHLITGMWA TPAERCFLWM  300
GGFRPSELLK TLTPQLDPLT EQQVVGICNL QQSSQQAEEA LSQGLDQLHQ SLAETVAGGS  360
PLDDPNVGSF MGHMAIALGQ LSNLEGFVIQ AARCFLAIGE YHNRLRALSS LWASRPREIL  420
VADEGNCGEL SIAAHPSESQ YSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069411	0.0	AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence.
GenBank	AK102690	0.0	AK102690.1 Oryza sativa Japonica Group cDNA clone:J033103B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617801.1	0.0	transcription factor TGAL4 isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A0E0FM11	0.0	A0A0E0FM11_ORYNI; Uncharacterized protein
STRING	ONIVA01G19020.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-112	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]