PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G14480.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 740aa MW: 82159.2 Da PI: 8.4421 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118.7 | 2.8e-37 | 106 | 183 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q ONIVA01G14480.9 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-28 | 101 | 168 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.248 | 104 | 181 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-35 | 105 | 185 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-28 | 107 | 180 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 3.25E-5 | 472 | 620 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.4E-4 | 483 | 619 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.34E-4 | 553 | 618 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAASGPS EQINGPNYLT NLVKNLAALA GTQRNQDMLK NANSAAIASH TGNYVAKGNS 240 LHDSRPHIPV GTESTAEEPT VERRVQNFDL NDAYVEGDEN RTDKIVFKLF GKEPNDFPSD 300 LRAQILSWLS NCPSDIESYI RPGCIILTIY MRLPNWMWDK LAADPAHWIQ KLISLSTDTL 360 WRTGWMYARV QDYLTLSCNG NLILASPWQP AIGNKHQILF ITPIAVACSS TANFSVKGLN 420 IAQPTTKLKI MIKAAFHFPL LLLKKMSHIR ATSETPKDCT EGFPAARFRW LLSFAVDREF 480 CAVIKKLLDT LFQGGVDLDV QSTVEFVLKQ DLVFVAVNKR SKPLIDFLLT YTTSSAPMDG 540 TESAAPAQFL FTPDIAGPSD ITPLHIAATY SDTAGVLDAL TDDPQQLGIK AWKNARDATG 600 LTPEDYARKR GHESYIEMVQ NKIDSRLPKA HVSVTISSTT STTDFTEKHA SQSKTTDQTA 660 FDVEKGQQIS TKPPLSCRQC LPELAYRHHL NRFLSTRPAV LSLVAIAAVC VCVGLIMQGP 720 PHIGGMRGPF RWNSLRSGPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 98 | 180 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 58 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068471 | 0.0 | AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence. | |||
GenBank | AK072849 | 0.0 | AK072849.1 Oryza sativa Japonica Group cDNA clone:J023142C13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614292.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Refseq | XP_015614297.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Refseq | XP_025880633.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0E0FKF9 | 0.0 | A0A0E0FKF9_ORYNI; Uncharacterized protein | ||||
STRING | BRADI2G11240.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 2e-88 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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