PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 537aa MW: 56141.7 Da PI: 6.5477

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G11450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.6	1.2e-27	213	267	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ ONIVA01G11450.1 213 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 267 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.104	210	269	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-18	211	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-26	211	270	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-26	213	267	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	216	265	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD 60 VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG 120 AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA 180 KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP 240 SRILELMGIE CLTRHNIASH LQKYRSHRKH LMAREAEAAS WTQKRQMYTA AAAAAAVAAG 300 GGPRKDAAAA TAAVAPWVMP TIGFPPPHAA AMVPPPPHPP PFCRPPLHVW GHPTAGVEPT 360 TAAAPPPPSP HAQPPLLPVW PRHLAPPPPP LPAAWAHGHQ PAPVDPAAYW QQQYNAARKW 420 GPQAVTPGTP CMPPPLPPAA MLQRFPVPPV PGMVPHPMYR PIPPPSPPQG NKLAALQLQL 480 DAHPSKESID AAIGDVLVKP WLPLPLGLKP PSLDSVMSEL HKQGIPKVPP AASGAAG

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG  120
AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA  180
KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP  240
SRILELMGIE CLTRHNIASH LQKYRSHRKH LMAREAEAAS WTQKRQMYTA AAAAAAVAAG  300
GGPRKDAAAA TAAVAPWVMP TIGFPPPHAA AMVPPPPHPP PFCRPPLHVW GHPTAGVEPT  360
TAAAPPPPSP HAQPPLLPVW PRHLAPPPPP LPAAWAHGHQ PAPVDPAAYW QQQYNAARKW  420
GPQAVTPGTP CMPPPLPPAA MLQRFPVPPV PGMVPHPMYR PIPPPSPPQG NKLAALQLQL  480
DAHPSKESID AAIGDVLVKP WLPLPLGLKP PSLDSVMSEL HKQGIPKVPP AASGAAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-15	218	269	6	57	Transcription factor LUX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	RGKKKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121019	0.0	AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615905.1	0.0	probable transcription factor GLK2 isoform X1
Swissprot	Q5NAN5	0.0	GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBL	A0A0E0FJA1	0.0	A0A0E0FJA1_ORYNI; Uncharacterized protein
STRING	ONIVA01G11450.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-44	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]