PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07970.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 913aa    MW: 99108.6 Da    PI: 6.3461
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07970.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-181270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ONIVA01G07970.4 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START150.21.8e-471794112204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT....... CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg....... 88 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g       
  ONIVA01G07970.4 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGangtiel 271
                      789*******************************************************.8888888888************************* PP

                      .................EEEEEEE...EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEEC CS
            START  89 .................galqlmv...aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepks 158
                                       ++l l +    +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p++
  ONIVA01G07970.4 272 lymqarthkpensepepEILKLKFvfdLQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSD 365
                      *****************555555422269999**************************************999999****************** PP

                      TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      +g+s +++v+h+dl+ +++++++r+l++s+++ ++k+ +a+l++++
  ONIVA01G07970.4 366 GGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLR 411
                      ******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
PfamPF000462.4E-161270IPR001356Homeobox domain
CDDcd000864.27E-161272No hitNo description
SuperFamilySSF466899.41E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-181470IPR009057Homeodomain-like
CDDcd146864.55E-664103No hitNo description
PROSITE profilePS5084823.77169413IPR002913START domain
SuperFamilySSF559617.97E-32170266No hitNo description
CDDcd088754.97E-68173412No hitNo description
Gene3DG3DSA:3.30.530.202.6E-17176388IPR023393START-like domain
SMARTSM002342.6E-34178413IPR002913START domain
PfamPF018521.2E-16179275IPR002913START domain
SuperFamilySSF559617.97E-32296392No hitNo description
PfamPF018522.6E-27300411IPR002913START domain
PfamPF086709.3E-50767912IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQVAHEDTRS  420
VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVIES DGVDDVCISV NSSKVIGCNA  480
TFSSGLPIVS TGVLCAKASM LLQDVSPPSL LQFLREHRSQ WADSNLDAFF ASAMKPNFCN  540
LPMSRLGGFS GQVILPLAHT FEPEEVLSNS VLLLNYFDAT IYCFQFLEVI KLGNASNYQD  600
TLVHRDLFLL QMYNGVEESS AGTCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLDTSS  660
PNCTLDLAST LEAATPRSRI SGVNGGGGGC AAAAASSSSK AVMTIAFQFA FDGHLQDSVA  720
AMARQYMRNI ISSVQRIAVA LSSSRLVPPG AAAAAAQLSP VTPEAATLPR WICQSYRFHF  780
GAELIKSVDA NSSNESILKA VWHHPSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM  840
TLEKVFDDQG RKNLCTELPN IMEQGMACME GGVCVSSVGR AASYEKAVAW KVVDGDGGGA  900
HCICFMFINW TFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
GenBankAK1120910.0AK112091.1 Oryza sativa Japonica Group cDNA clone:002-107-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0FHY60.0A0A0E0FHY6_ORYNI; Uncharacterized protein
STRINGONIVA01G07970.40.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein