PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G07970.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 913aa MW: 99108.6 Da PI: 6.3461 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 1e-18 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ ONIVA01G07970.4 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 150.2 | 1.8e-47 | 179 | 411 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT....... CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg....... 88 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W ++++++++++v+ g ONIVA01G07970.4 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGangtiel 271 789*******************************************************.8888888888************************* PP .................EEEEEEE...EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEEC CS START 89 .................galqlmv...aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepks 158 ++l l + +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p++ ONIVA01G07970.4 272 lymqarthkpensepepEILKLKFvfdLQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSD 365 *****************555555422269999**************************************999999****************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 +g+s +++v+h+dl+ +++++++r+l++s+++ ++k+ +a+l++++ ONIVA01G07970.4 366 GGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLR 411 ******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.4E-16 | 12 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.27E-16 | 12 | 72 | No hit | No description |
SuperFamily | SSF46689 | 9.41E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.55E-6 | 64 | 103 | No hit | No description |
PROSITE profile | PS50848 | 23.77 | 169 | 413 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-32 | 170 | 266 | No hit | No description |
CDD | cd08875 | 4.97E-68 | 173 | 412 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.6E-17 | 176 | 388 | IPR023393 | START-like domain |
SMART | SM00234 | 2.6E-34 | 178 | 413 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-16 | 179 | 275 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-32 | 296 | 392 | No hit | No description |
Pfam | PF01852 | 2.6E-27 | 300 | 411 | IPR002913 | START domain |
Pfam | PF08670 | 9.3E-50 | 767 | 912 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM 120 RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ 300 LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL 360 IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQVAHEDTRS 420 VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVIES DGVDDVCISV NSSKVIGCNA 480 TFSSGLPIVS TGVLCAKASM LLQDVSPPSL LQFLREHRSQ WADSNLDAFF ASAMKPNFCN 540 LPMSRLGGFS GQVILPLAHT FEPEEVLSNS VLLLNYFDAT IYCFQFLEVI KLGNASNYQD 600 TLVHRDLFLL QMYNGVEESS AGTCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLDTSS 660 PNCTLDLAST LEAATPRSRI SGVNGGGGGC AAAAASSSSK AVMTIAFQFA FDGHLQDSVA 720 AMARQYMRNI ISSVQRIAVA LSSSRLVPPG AAAAAAQLSP VTPEAATLPR WICQSYRFHF 780 GAELIKSVDA NSSNESILKA VWHHPSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM 840 TLEKVFDDQG RKNLCTELPN IMEQGMACME GGVCVSSVGR AASYEKAVAW KVVDGDGGGA 900 HCICFMFINW TFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. | |||
GenBank | AK112091 | 0.0 | AK112091.1 Oryza sativa Japonica Group cDNA clone:002-107-A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0E0FHY6 | 0.0 | A0A0E0FHY6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G07970.4 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |