PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G07970.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 790aa    MW: 85251.7 Da    PI: 6.7356
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G07970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ONIVA01G07970.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START139.14.5e-441793702204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  ONIVA01G07970.2 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+
  ONIVA01G07970.2 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLY 351
                      .799***************************************999999********************************************* PP

                      HHHHHHHHHHHHHHTXXXX CS
            START 186 ksglaegaktwvatlqrqc 204
                      +s+++ ++k+ +a+l++++
  ONIVA01G07970.2 352 ESSAMVAQKISMAALRYLR 370
                      ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
PfamPF000462.0E-161270IPR001356Homeobox domain
CDDcd000863.39E-161272No hitNo description
SuperFamilySSF466897.7E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-181470IPR009057Homeodomain-like
CDDcd146863.80E-664103No hitNo description
PROSITE profilePS5084819.188169372IPR002913START domain
Gene3DG3DSA:3.30.530.205.6E-16176347IPR023393START-like domain
SuperFamilySSF559612.61E-31178372No hitNo description
SMARTSM002342.0E-34178372IPR002913START domain
PfamPF018528.5E-42179370IPR002913START domain
PfamPF086707.4E-50644789IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP  300
SMPLVQPFIR GEMLPSGFLI RPSDGGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK  360
ISMAALRYLR QVAHEDTRSV ITGWGRQPAA LRALSQKLTR GFNEALNGLA DDGWSVIESD  420
GVDDVCISVN SSKVIGCNAT FSSGLPIVST GVLCAKASML LQFLEVIKLG NASNYQDTLV  480
HRDLFLLQMY NGVEESSAGT CSELIFAPID ASFSDDSPLL PSGFRIIPID SPLDTSSPNC  540
TLDLASTLEA ATPRSRISGV NGGGGGCAAA AASSSSKAVM TIAFQFAFDG HLQDSVAAMA  600
RQYMRNIISS VQRIAVALSS SRLVPPGAAA AAAQLSPVTP EAATLPRWIC QSYRFHFGAE  660
LIKSVDANSS NESILKAVWH HPSAILCCSL KAMPVFTFAN QSGLDMLETT LVALQDMTLE  720
KVFDDQGRKN LCTELPNIME QGMACMEGGV CVSSVGRAAS YEKAVAWKVV DGDGGGAHCI  780
CFMFINWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be necessary for the proper patterning of vascular bundles. {ECO:0000269|PubMed:18567825}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
GenBankAK1120910.0AK112091.1 Oryza sativa Japonica Group cDNA clone:002-107-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotQ5QMZ90.0HOX29_ORYSJ; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0FHY40.0A0A0E0FHY4_ORYNI; Uncharacterized protein
STRINGOBART01G06400.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]