PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G01950.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 560aa    MW: 60592.5 Da    PI: 6.4665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G01950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-17412455146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++
  ONIVA01G01950.1 412 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 455
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118059.5E-15048386IPR021763Protein of unknown function DUF3326
PROSITE profilePS5129422.668407461IPR017930Myb domain
SMARTSM007171.7E-15411459IPR001005SANT/Myb domain
PfamPF002493.0E-15412455IPR001005SANT/Myb domain
SuperFamilySSF466896.16E-14412471IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-20414457IPR009057Homeodomain-like
CDDcd001671.88E-5432457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA  60
VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ  120
PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK  180
STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII  240
SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG  300
NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATNNKPL IITVQENETV LDDTPDKFNI  360
EALNVQNYWE AIGVIAAHKA GLQVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSEEED  420
ELLLKLHALL GNRWSLIAGR LPGRTDKEVM NHWNSKLMDS TIEHPPSLHD DEHRRRRRRL  480
RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC  540
IYLLLGQDRE DGSKSNQGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408413SRKRRS
2473480RRRRRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028600.0AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878284.10.0uncharacterized protein LOC4325987
SwissprotP084521e-111Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBLA0A0E0FFP20.0A0A0E0FFP2_ORYNI; Uncharacterized protein
STRINGONIVA01G01950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-09MYB family protein