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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G12970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 991aa MW: 107797 Da PI: 8.2209 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.9 | 1.3e-15 | 458 | 497 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OMERI12G12970.1 458 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 497 689**********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.1E-15 | 457 | 498 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 17.685 | 458 | 550 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 460 | 495 | IPR005172 | CRC domain |
Gene3D | G3DSA:3.10.110.10 | 1.8E-32 | 859 | 990 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
SuperFamily | SSF54495 | 9.18E-34 | 859 | 991 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
PROSITE profile | PS50127 | 16.714 | 861 | 970 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
SMART | SM00212 | 1.9E-5 | 861 | 990 | No hit | No description |
Pfam | PF00179 | 7.2E-13 | 888 | 976 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
Sequence ? help Back to Top |
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Protein Sequence Length: 991 aa Download sequence Send to blast |
MDTPDRPPRA AAAAAATAAV EDSPVFNFIN SLSPIPPPKP SDSAHNVQLF KSSDLAPVSS 60 IFASPHVNPA KESKLPIRED SVQLSRESHS PNSVRTRTGA TSSIRMIRCK NIVSENCSIT 120 CYLNDSTSSK ASEPIQLCGG SAESDTNQNT DGKKDPTTEQ DRTDIEFVLL DQSGPEKMDS 180 SQSGNNLCEN QLSEQHKDEL GSFDGGYMIA HQPHSDMLRL APPFESETQL VNETLQTDNV 240 YCESLLTDGP SGSYTQNSAP DPHLYWAGAV EGCATDYTPQ MLPGACQSQL VPNDQINNKL 300 NEPSDYMPMD HNVSSQNLRG MRRRCLFNEK SGAANKGAKN TSARHSTNST TPRRKISSSD 360 NNLKTLRTPP CALPGIGLHL NALATVPKDK MVPHNDIQSS LNQASNVLSA VGSSPPTVDP 420 HTVNDDSSQT AVVAYVGESS QGSPKKKRHK FDNGDGTSCK RCSCKKSKCL KLYCECFHAG 480 VFCSEPCSCQ GCLNKPSNME TVLSTREQIE SRNPLAFAPK VIRTEPGQEL AGGVGCSVSC 540 RCEGCKNAFG RREGVALLGI EEAKRGCEEK DGGVKEETTD NDKQLVIYQD SINLTPAESV 600 LATPSVVDYR PLVALPPLSS KKPRSSTKLG GYSSRLEGRL KSDILLSPFE SYAEMMLGDG 660 TSNVLKGESS PQTSVKVVSP NKKRVSPPRI GTGLSPICKS GRKLILKSIP SFPSLGGDIT 720 NEDPNTKDQI ANISVCIRET LAQSSFKNSY RACSRTGLGP TQPTSENALL TTCLLPARLA 780 SSRLWGSARL GSSSPPLLWL ASSPRTHTPP KGNGSEPLLL RRRRRRPHAR PPLRPRVVVA 840 KPAPPPALSW DGVEWRSIGS RRLLEELERG EKGIGDGSVS YGMDDADDIY MRSWTGTIIG 900 PHNTVHEGRI YQLKLFCDKD YPDRPPTVKF HSRINMTCVN PENGLVDQRK FSLLSNWRRE 960 YTMEAILTQL KKEMAASHNR KLVQPPEGTI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jat_B | 4e-41 | 862 | 991 | 10 | 138 | Ubiquitin-Conjugating Enzyme Variant Mms2 |
2gmi_B | 3e-41 | 862 | 991 | 9 | 137 | Ubiquitin-conjugating enzyme variant MMS2 |
5ojw_B | 3e-41 | 862 | 991 | 9 | 137 | Ubiquitin-conjugating enzyme variant MMS2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 819 | 826 | LRRRRRRP |
2 | 820 | 825 | RRRRRR |
3 | 823 | 830 | RRRPHARP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073942 | 0.0 | AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620275.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0E0FDY6 | 0.0 | A0A0E0FDY6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G12890.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 4e-47 | Tesmin/TSO1-like CXC domain-containing protein |