PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 25298.4 Da    PI: 5.3572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-1677127255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GV+++   grW AeIrd    + ++  rf++g+f+ta eAa a++a  ++l+g
  OMERI12G12820.1  77 GFLGVHQRT-YGRWSAEIRD----NvIKgSRFWIGTFDTALEAALAYDAVSRRLYG 127
                      788***999.8*********....66345********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-1877136IPR016177DNA-binding domain
SMARTSM003807.9E-1977141IPR001471AP2/ERF domain
PROSITE profilePS5103218.17677135IPR001471AP2/ERF domain
PRINTSPR003671.2E-57889IPR001471AP2/ERF domain
CDDcd000187.17E-1978137No hitNo description
Gene3DG3DSA:3.30.730.109.2E-2378136IPR001471AP2/ERF domain
PfamPF008474.1E-980127IPR001471AP2/ERF domain
PRINTSPR003671.2E-5101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMVDEEDDDE EVEIIAVVSP PRRPLVGARG TTSAAESVTL PLSNPVAPQT GGDATKASKR  60
GGGAKPAAAK KRRSKHGFLG VHQRTYGRWS AEIRDNVIKG SRFWIGTFDT ALEAALAYDA  120
VSRRLYGLNA KTNFPAAAGE DLPPPAPVAP MPCSSTKRPK KYCNTSGDHG GAAAPPQAVD  180
TPAAAAGGVE VTSLLCSVAA QAQEVSDGWE FIQELLLLGG GVSPLDYLNG QDQLVGADLW  240
SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974KKRRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875440.0AK287544.1 Oryza sativa Japonica Group cDNA, clone: J065016L10, full insert sequence.
GenBankAL8375280.0AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9287810.0AL928781.4 Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619473.11e-110ethylene-responsive transcription factor ERF023
TrEMBLA0A0E0FDX21e-176A0A0E0FDX2_9ORYZ; Uncharacterized protein
STRINGOMERI12G12770.11e-177(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-17ERF family protein