PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G12480.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 365aa MW: 38687.8 Da PI: 10.5352

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G12480.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.2e-31	299	356	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OMERI12G12480.2 299 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 356 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.3E-18	250	295	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.4E-34	285	356	IPR003657	WRKY domain
PROSITE profile	PS50811	30.148	292	355	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-27	295	356	IPR003657	WRKY domain
SMART	SM00774	4.4E-38	297	357	IPR003657	WRKY domain
Pfam	PF03106	5.0E-27	299	355	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGRGGGGGH ARGRMAGRSR PSAVLREKGF LESSGGGGQL GMMMSSAATP STSSATHLRN 120 RIGGGGGVPP DSLRGLDLVS SSSKGGAHQF DPPKLVQPLS VQFQFGATAH RYPFQQHQHQ 180 QKLQAEMFKR SNSGISLKFD SPSATGTMSS AFMSSLSMDG SVASLEGKPP FHLIGGPVAS 240 DPVNAHHAPK RRCTGRGEDG SGKCATTGRC HCSKRRKLRI KRSIKVPAIS NKIADIPPDE 300 YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DPAMLIVTYE GEHNHTRLPT 360 QSAQT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGRGGGGGH ARGRMAGRSR PSAVLREKGF LESSGGGGQL GMMMSSAATP STSSATHLRN  120
RIGGGGGVPP DSLRGLDLVS SSSKGGAHQF DPPKLVQPLS VQFQFGATAH RYPFQQHQHQ  180
QKLQAEMFKR SNSGISLKFD SPSATGTMSS AFMSSLSMDG SVASLEGKPP FHLIGGPVAS  240
DPVNAHHAPK RRCTGRGEDG SGKCATTGRC HCSKRRKLRI KRSIKVPAIS NKIADIPPDE  300
YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DPAMLIVTYE GEHNHTRLPT  360
QSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	285	359	2	75	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	68	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070648	0.0	AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620342.1	0.0	protein WRKY1
Swissprot	Q93WU6	2e-91	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0E0FDS2	0.0	A0A0E0FDS2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FDS3	0.0	A0A0E0FDS3_9ORYZ; Uncharacterized protein
STRING	OMERI12G12420.2	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	5e-73	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]