PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G09170.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 502aa    MW: 53378 Da    PI: 7.4028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G09170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32232288259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  OMERI12G09170.1 232 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 288
                      8**************************************99.***************8 PP
2WRKY107.18.8e-34388446159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  OMERI12G09170.1 388 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 446
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28228290IPR003657WRKY domain
SuperFamilySSF1182902.62E-25230290IPR003657WRKY domain
SMARTSM007742.5E-34231289IPR003657WRKY domain
PROSITE profilePS5081123.192232290IPR003657WRKY domain
PfamPF031061.5E-24232288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36374448IPR003657WRKY domain
SuperFamilySSF1182902.35E-29380448IPR003657WRKY domain
PROSITE profilePS5081137.413383448IPR003657WRKY domain
SMARTSM007741.1E-39388447IPR003657WRKY domain
PfamPF031063.8E-26389446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GMTSSSAAAA  60
GSTSFTQLLI GNLSAPPPPP PPQQQQREAA RGGGVARAGP ALSVAPPPPA VGAAAGSVFT  120
VPPGLSPSGL LDSPGLLFSP AMGGFGMSHR EALAQVTAQA SHSPLRMFDH TEQPSFSAAT  180
SSEAMQHMNA AVNMTGISDM VTGLENNENV AFQPAEASQR YQVNAPVDKP ADDGYNWRKY  240
GQKVVKGSDC PRSYYKCTHP NCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRAKDGSS  300
SAADQNEQSN DTTSGLSGIK RDQEAIYGMS EQLSGLSEGD DMDDGESRPH EADDKESDSK  360
KRNIQISSQR TSAEAKIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTYAGCN  420
VRKHIERASS DPKAVITTYE GKHNHEPPVG RGNNQNAGNA APSSSARQNM QNLSSNQASL  480
TMADFNNINQ RPIGVLQFKS EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38222448877Probable WRKY transcription factor 4
2lex_A1e-38222448877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLA0A0E0FCE30.0A0A0E0FCE3_9ORYZ; Uncharacterized protein
STRINGOMERI12G09030.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-103WRKY DNA-binding protein 3