PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G06120.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1256aa    MW: 140250 Da    PI: 7.6882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G06120.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003211371160122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  OMERI12G06120.2 1137 FPCDieGCDMSFSTQQDLLLHKRD 1160
                       789999***************985 PP
2zf-C2H2120.0006412201246123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg++F+  s++ rH r+  H
  OMERI12G06120.2 1220 YECQepGCGQTFRFVSDFSRHKRKtgH 1246
                       899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.1E-142154IPR003349JmjN domain
PROSITE profilePS5118432.998186355IPR003347JmjC domain
SMARTSM005585.2E-43186355IPR003347JmjC domain
SuperFamilySSF511979.34E-23202351No hitNo description
PfamPF023731.5E-34219338IPR003347JmjC domain
SMARTSM003559.711371159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90711601189IPR007087Zinc finger, C2H2
SMARTSM003551511601184IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011621184IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-1411711227No hitNo description
Gene3DG3DSA:3.30.160.604.8E-1111871214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.65511901219IPR007087Zinc finger, C2H2
SMARTSM003558.6E-411901214IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011921214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-1012151243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92612201251IPR007087Zinc finger, C2H2
SMARTSM003550.1812201246IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012221246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1256 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQA AFAAAASSNG AGGDPSPTFP TRLQQVGLSA RNRRAASRRV WESGERYTLE  120
AFRAKAAEFE PPRHAAPPKN PTHLQLEALF WAACASRPFS VEYGNDMPGS GFASPDELPD  180
AANATDVGET EWNMRVAPRA RGSLLRAMAR DVAGVTTPML YVAMLYSWFA WHVEDHELHS  240
LNFLHFGKAK TWYGVPRDAM LAFEETVRVH GYADDLNAIM AFQTLNEKTT VLSPEVLLSA  300
GVPCCRLVQK AGEFVITFPG AYHSGFSHGF NCGEASNIAT PHWLQVAKEA AIRRASTNCG  360
PMVSHYQLLY ELTLSLRPRE PKNFYSVPRS SRLRDKNKNE GDIMVKENFV GSVTENNNLL  420
SVLLDKNSCI IVPNTDFFVP SFPVALESEA TVKQRFTAGP CSISQQGAEN MAVDHVAVDK  480
VTDIQDMSGS LYPCETSPVS GTDDNVKHAV SLAHVSDRCR ELYASNTDGC TSALGLLASA  540
YDSSDSDDET TEDVLKHSKK NDSVNQSTDT QILETSASCS STVRCQKTNS HSHEEECEAR  600
ATSLMKPVSH NSRPISQSNR DTDIDQFIEL GKSGTQCSGY LDLVDDLTTS VLKSSSDTCV  660
SAAKASMDPD VLTMLRYNKD SCRMHVFCLE HALETWTQLQ QIGGANIMLL CHPEYPRAES  720
AAKVIAEELG IKHDWKDITF KEATEEDVKK IRLALQDEDA EPTGSDWAVK MGINIYYSAK  780
QSKSPLYSKQ IPYNSIIYKA FGQENPDSLT DYGCQKSGST KKKVAGWWCG KVWMSNQVHP  840
LLAREREEQN SSVVYGKAMF TTISHGKVPD EASTRCNTSN RTPSKRTSRR KKGVSAEKSK  900
PKNKRSTASD EASMHCSGLG MNSGVIHDQT ENFDDYDKHG NGDEIEEGTN PQKYQQHKLQ  960
NVTRKSSSKK RKDEKRTDSF HELYDEDNGV DYWLNMGSGH DATLGNSRQQ SPDPVKVKSG  1020
GKLQGKRKSS KYKSNDDLLN EENKLQKMNK KSSSKKQKND KINRQLQEDQ TEDDHMDHLV  1080
DVAVADEVTL DNEDKITEDK IDDVKVKSRG KSQNGKRKGS KHQASDGLRA GNKVAKFPCD  1140
IEGCDMSFST QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHIDERPL KCTWKGCKKA  1200
FKWPWARTEH MRVHTGVRPY ECQEPGCGQT FRFVSDFSRH KRKTGHSSDK RRKNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-69123697346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-69123697346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
SwissprotQ5N7121e-153JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0FBA80.0A0A0E0FBA8_9ORYZ; Uncharacterized protein
STRINGOMERI12G06090.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-144relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]