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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G01910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 658aa MW: 67176.4 Da PI: 6.2631 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 377 | 414 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + OMERI12G01910.1 377 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 414 554459******************************88 PP | |||||||
2 | BELL | 116.5 | 1.3e-37 | 225 | 296 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++l+eV++rY+qy+ q+q+v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+ OMERI12G01910.1 225 ERQELQMKKSKLLNMLDEVEQRYRQYHRQMQAVAAAFEAAAGAGSATTYTSLALRTISRQFRCLRDAIAAQV 296 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.3E-56 | 159 | 294 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-47 | 161 | 293 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.904 | 355 | 418 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-10 | 358 | 422 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.03E-13 | 358 | 419 | No hit | No description |
SuperFamily | SSF46689 | 3.76E-17 | 359 | 425 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 361 | 424 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.4E-18 | 375 | 414 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MAAYFTGGGA GTDVVQAAGT DSLQTLYLMN PSYVGFTDAA AAHGGGAAAA NMVFLNSAVS 60 TLTPASFGHQ PTPVAQHFVG IPLQPAPQSG YNLWGPDATG GNDVSPPRHG AQQHAPAAGT 120 SAAAAAAVSP VLSLSSREAA PPVTVASAAA VPGGTEQEQQ VVMRSRYLKA AQELLDEAVS 180 VSKGAATAVK KKEGSEGGVS GGGAGGVDDG GGSKSGVAGE MSTAERQELQ MKKSKLLNML 240 DEVEQRYRQY HRQMQAVAAA FEAAAGAGSA TTYTSLALRT ISRQFRCLRD AIAAQVRAAS 300 RGLGEDYGGD DEDGSGGGRT TVGSRLRFID HQLRQQRAMQ QLGMVHAAAA GGPAGGGWRP 360 QRGLPERAVS VLRAWLFEHF LHPYPKDSDK VMLAKQTGLT RSQVSNWFIN ARVRLWKPMV 420 EEMYAEETKA KEEEHDAAAA AGGDGGGGSN GSVAEQAPSK PDDSAGIGMS SSSPAAAAAS 480 RSVGVHAGDQ QAQASFYGGG GGGDDPFQCR IKKTRTTTAD EAAAAAFHVT GEAAVSHREL 540 LMKFMEAGGE GVRSGHPHVI DDDDDVAAAG AGGYSLFTPA PYGHQFGSDH FAFAGHGGGG 600 GGMSLTLGLP HGADQTPASF LMGAGSDGGG APVTTAGYDM NMQSTKSLAA QLMRDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-17 | 364 | 422 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-17 | 364 | 422 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 1e-17 | 364 | 422 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 364 | 422 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120844 | 0.0 | AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619926.2 | 0.0 | LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0E0F9N8 | 0.0 | A0A0E0F9N8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G01890.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 6e-77 | BEL1-like homeodomain 1 |