PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1120aa    MW: 123983 Da    PI: 6.9604
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS112.45.8e-355126224335
             GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..........eerikvErellgreivnvvacegaerre 307
                        ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s          +er+ vEr+++g+ei+ v+   ga+rre
  OMERI12G01260.1   5 LASFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTSaashlwywppDERAQVERVVVGEEIKGVLLRDGAHRRE 98 
                      467*********************************************9998888888899999999*************************** PP

             GRAS 308 rhetlekWrerleeaGFkpvplsekaak 335
                      rh +l +W +r+e+aGF+ vpls++a  
  OMERI12G01260.1  99 RHDRLWQWAARMETAGFTGVPLSYDAIR 126
                      ************************9975 PP

2GRAS121.21.3e-3714937777259
             GRAS  77 elaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                        aa++ f+++ P+l  +++t N+aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ 
  OMERI12G01260.1 149 LRAARHNFFKLNPYLSTGFVTINRAIMEAMEDEkvdlQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSL 238
                      3456677**************************999999******8653389***************************....9********** PP

             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrll........................................ 214
                      L+k Ae+lgv+f+f   v  rle+l++++Lr       g a+a++++lq+hrll                                        
  OMERI12G01260.1 239 LSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsptsiaqlqkmanftqpkqmassvcspastlnyl 331
                      ****************.799**********54444555*******************************************************9 PP

             GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                         s  +++   ++L++++ l+P+++ ++eq+adhn+  F +rf e
  OMERI12G01260.1 332 qTPSPRTPKLLARLLSAIRALKPNIMLIMEQDADHNTLLFRDRFNE 377
                      8666777778899*******************************87 PP

3GRAS1103.2e-34381599110338
             GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvk 197
                      + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v  rle+l++++L    ++k
  OMERI12G01260.1 381 QVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLrsifQIK 469
                      579*****8653389***************************....9**************************.7999*******995444555 PP

             GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfle...aleyysalfdsleaklpreseerikvEr 287
                       g a+a++++lq+hrll     l +          +lsP+ +   ++ a+  + ++ +  +++   +l+y  +    l+a  p  ++er  vEr
  OMERI12G01260.1 470 FGVAVAISCALQMHRLL-----LVD---------DNLSPTSIAQLQKMANFtQPKQMASSVCSpasTLNYLQTP-SPLAAANPGRTDERLRVER 548
                      5***************9.....333.........4688888888888888833445555555411134444443.33455558889******** PP

             GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                      ++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  ++ 
  OMERI12G01260.1 549 MILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREVG 599
                      *******************************************99987765 PP

4GRAS349.74.5e-10767211092374
             GRAS    2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92  
                       + lL++cA  v++g++ +a+ +L+++ +las d   ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk
  OMERI12G01260.1  672 IGLLYQCAAEVATGSFDRANLCLEHITQLASLDSpHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLK 762 
                       679******************************99*****************************888887544.44446778899******* PP

             GRAS   93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 
                       +++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn  v
  OMERI12G01260.1  763 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNG-V 849 
                       *************************966899****************************....9**************************.7 PP

             GRAS  183 akrledleleeL....rvkpgEalaVnlvlqlhrll........................................................ 214 
                       + +l+++++++L     v++gEala+++vlqlhrll                                                        
  OMERI12G01260.1  850 EAKLDEMDFDALrhdlGVRSGEALAISVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphs 941 
                       999**999998843335677************************************************************************ PP

             GRAS  215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 
                             +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvac
  OMERI12G01260.1  942 paaataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVAC 1032
                       ****98555555556999*********************************************999.68889******************** PP

             GRAS  301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 
                       egaer+ rhe++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  OMERI12G01260.1 1033 EGAERVDRHERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDaaGHGFFFCWHKRPLFAVTAWR 1109
                       *********************************************8888*999764467788**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.8011615IPR005202Transcription factor GRAS
PfamPF035142.0E-325126IPR005202Transcription factor GRAS
PfamPF035144.5E-35149377IPR005202Transcription factor GRAS
PfamPF035141.1E-31381599IPR005202Transcription factor GRAS
PROSITE profilePS5098549.9416451086IPR005202Transcription factor GRAS
PfamPF035141.6E-1046721109IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MPAPLASFLS AVRALSPKIV VVAEQDADHN GVSFRKRFCE ALHHYAAVFD SLDAAAATTS  60
AASHLWYWPP DERAQVERVV VGEEIKGVLL RDGAHRRERH DRLWQWAARM ETAGFTGVPL  120
SYDAIRKGND MGLPGAFIDP SDYFEKSTLR AARHNFFKLN PYLSTGFVTI NRAIMEAMED  180
EKVDLQVVHI VDLSCSAAHP WQWLKLLDDF HGRPGGAPEL YLTVLHDDND FLADMQSLLS  240
KKAESLGVSF HFISVIGRLE TLDFSNLRST FQIKFGVAVA ISCALQMHRL LLVDDNLSPT  300
SIAQLQKMAN FTQPKQMASS VCSPASTLNY LQTPSPRTPK LLARLLSAIR ALKPNIMLIM  360
EQDADHNTLL FRDRFNEVDL QVVHIVDLSC SAAHPWQWLK LLDDFHGRPG GAPELYLTVL  420
HDDNDFLADM QSLLSKKAES LGVSFHFISV IGRLETLDFS NLRSIFQIKF GVAVAISCAL  480
QMHRLLLVDD NLSPTSIAQL QKMANFTQPK QMASSVCSPA STLNYLQTPS PLAAANPGRT  540
DERLRVERMI LREEIKNILV CEGVHRHERH ERLDQWAMHM EESGFHNVQL SFSAIREVGF  600
RGNSRAADYI QISHSGCSVQ DMSGSSRGMF QDDMLSSATS SPASSVYSPS PSPSNGSWVQ  660
ELSHDQQSVR LIGLLYQCAA EVATGSFDRA NLCLEHITQL ASLDSPHALQ RLAAVFADAL  720
ARKLLNLIPG LSRALLSSAN SADAHLVPVA RRHMFDVLPF LKLAYLTTNH AILEAMEGER  780
FVHVVDFSGP AANPVQWIAL FHAFRGRREG PPHLRITAVH DSKEFLANMA AVLSKEAEAF  840
DIAFQFNGVE AKLDEMDFDA LRHDLGVRSG EALAISVVLQ LHRLLAVDDG RRHAAAGCLT  900
PVQIIARSSP RSFGELLERE LNTRLQLSPD ASVVSSLSPH SPAAATAAHP TTSTPKLGSF  960
LSAVRSLSPK IMVMTEQEAN HNGGAFQERF DEALNYYASL FDCLQRSAAA AAERARVERV  1020
LLGEEIRGVV ACEGAERVDR HERARQWAAR MEAAGMERVG LSYSGAMEAR KLLQSCGWAG  1080
PYEVRHDAAG HGFFFCWHKR PLFAVTAWRP AASRRHHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-28701110932375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514800.0AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.10.0scarecrow-like protein 3
TrEMBLA0A0E0F9E00.0A0A0E0F9E0_9ORYZ; Uncharacterized protein
STRINGOMERI12G01210.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-97scarecrow-like 3