PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G01260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1120aa MW: 123983 Da PI: 6.9604 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 112.4 | 5.8e-35 | 5 | 126 | 224 | 335 |
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..........eerikvErellgreivnvvacegaerre 307 ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s +er+ vEr+++g+ei+ v+ ga+rre OMERI12G01260.1 5 LASFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTSaashlwywppDERAQVERVVVGEEIKGVLLRDGAHRRE 98 467*********************************************9998888888899999999*************************** PP GRAS 308 rhetlekWrerleeaGFkpvplsekaak 335 rh +l +W +r+e+aGF+ vpls++a OMERI12G01260.1 99 RHDRLWQWAARMETAGFTGVPLSYDAIR 126 ************************9975 PP | |||||||
2 | GRAS | 121.2 | 1.3e-37 | 149 | 377 | 77 | 259 |
GRAS 77 elaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164 aa++ f+++ P+l +++t N+aI+ea+e e + vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l +++ OMERI12G01260.1 149 LRAARHNFFKLNPYLSTGFVTINRAIMEAMEDEkvdlQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSL 238 3456677**************************999999******8653389***************************....9********** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrll........................................ 214 L+k Ae+lgv+f+f v rle+l++++Lr g a+a++++lq+hrll OMERI12G01260.1 239 LSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsptsiaqlqkmanftqpkqmassvcspastlnyl 331 ****************.799**********54444555*******************************************************9 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 s +++ ++L++++ l+P+++ ++eq+adhn+ F +rf e OMERI12G01260.1 332 qTPSPRTPKLLARLLSAIRALKPNIMLIMEQDADHNTLLFRDRFNE 377 8666777778899*******************************87 PP | |||||||
3 | GRAS | 110 | 3.2e-34 | 381 | 599 | 110 | 338 |
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvk 197 + vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l +++ L+k Ae+lgv+f+f v rle+l++++L ++k OMERI12G01260.1 381 QVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLrsifQIK 469 579*****8653389***************************....9**************************.7999*******995444555 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfle...aleyysalfdsleaklpreseerikvEr 287 g a+a++++lq+hrll l + +lsP+ + ++ a+ + ++ + +++ +l+y + l+a p ++er vEr OMERI12G01260.1 470 FGVAVAISCALQMHRLL-----LVD---------DNLSPTSIAQLQKMANFtQPKQMASSVCSpasTLNYLQTP-SPLAAANPGRTDERLRVER 548 5***************9.....333.........4688888888888888833445555555411134444443.33455558889******** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a ++ OMERI12G01260.1 549 MILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREVG 599 *******************************************99987765 PP | |||||||
4 | GRAS | 349.7 | 4.5e-107 | 672 | 1109 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + lL++cA v++g++ +a+ +L+++ +las d ++qRlaa+f+ ALa++l++ ++l++al +s++s + + a++ ++v P+lk OMERI12G01260.1 672 IGLLYQCAAEVATGSFDRANLCLEHITQLASLDSpHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLK 762 679******************************99*****************************888887544.44446778899******* PP GRAS 93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 +++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ ske l +++ L+k Ae++++ f+fn v OMERI12G01260.1 763 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNG-V 849 *************************966899****************************....9**************************.7 PP GRAS 183 akrledleleeL....rvkpgEalaVnlvlqlhrll........................................................ 214 + +l+++++++L v++gEala+++vlqlhrll OMERI12G01260.1 850 EAKLDEMDFDALrhdlGVRSGEALAISVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphs 941 999**999998843335677************************************************************************ PP GRAS 215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +++++++ + ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvac OMERI12G01260.1 942 paaataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVAC 1032 ****98555555556999*********************************************999.68889******************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 egaer+ rhe++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr OMERI12G01260.1 1033 EGAERVDRHERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDaaGHGFFFCWHKRPLFAVTAWR 1109 *********************************************8888*999764467788**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.801 | 1 | 615 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-32 | 5 | 126 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-35 | 149 | 377 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-31 | 381 | 599 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 49.941 | 645 | 1086 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-104 | 672 | 1109 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 1120 aa Download sequence Send to blast |
MPAPLASFLS AVRALSPKIV VVAEQDADHN GVSFRKRFCE ALHHYAAVFD SLDAAAATTS 60 AASHLWYWPP DERAQVERVV VGEEIKGVLL RDGAHRRERH DRLWQWAARM ETAGFTGVPL 120 SYDAIRKGND MGLPGAFIDP SDYFEKSTLR AARHNFFKLN PYLSTGFVTI NRAIMEAMED 180 EKVDLQVVHI VDLSCSAAHP WQWLKLLDDF HGRPGGAPEL YLTVLHDDND FLADMQSLLS 240 KKAESLGVSF HFISVIGRLE TLDFSNLRST FQIKFGVAVA ISCALQMHRL LLVDDNLSPT 300 SIAQLQKMAN FTQPKQMASS VCSPASTLNY LQTPSPRTPK LLARLLSAIR ALKPNIMLIM 360 EQDADHNTLL FRDRFNEVDL QVVHIVDLSC SAAHPWQWLK LLDDFHGRPG GAPELYLTVL 420 HDDNDFLADM QSLLSKKAES LGVSFHFISV IGRLETLDFS NLRSIFQIKF GVAVAISCAL 480 QMHRLLLVDD NLSPTSIAQL QKMANFTQPK QMASSVCSPA STLNYLQTPS PLAAANPGRT 540 DERLRVERMI LREEIKNILV CEGVHRHERH ERLDQWAMHM EESGFHNVQL SFSAIREVGF 600 RGNSRAADYI QISHSGCSVQ DMSGSSRGMF QDDMLSSATS SPASSVYSPS PSPSNGSWVQ 660 ELSHDQQSVR LIGLLYQCAA EVATGSFDRA NLCLEHITQL ASLDSPHALQ RLAAVFADAL 720 ARKLLNLIPG LSRALLSSAN SADAHLVPVA RRHMFDVLPF LKLAYLTTNH AILEAMEGER 780 FVHVVDFSGP AANPVQWIAL FHAFRGRREG PPHLRITAVH DSKEFLANMA AVLSKEAEAF 840 DIAFQFNGVE AKLDEMDFDA LRHDLGVRSG EALAISVVLQ LHRLLAVDDG RRHAAAGCLT 900 PVQIIARSSP RSFGELLERE LNTRLQLSPD ASVVSSLSPH SPAAATAAHP TTSTPKLGSF 960 LSAVRSLSPK IMVMTEQEAN HNGGAFQERF DEALNYYASL FDCLQRSAAA AAERARVERV 1020 LLGEEIRGVV ACEGAERVDR HERARQWAAR MEAAGMERVG LSYSGAMEAR KLLQSCGWAG 1080 PYEVRHDAAG HGFFFCWHKR PLFAVTAWRP AASRRHHTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-28 | 701 | 1109 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123527 | 0.0 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. | |||
GenBank | AC151480 | 0.0 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616659.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0F9E0 | 0.0 | A0A0E0F9E0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G01210.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 7e-97 | scarecrow-like 3 |