PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01090.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 554aa    MW: 61214.1 Da    PI: 4.9747
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.75.4e-1011655461373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+  s+l + l +s++++ +  e l a+++f  ++ +  ++
  OMERI12G01090.1 165 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-ASSLERRLLASAEERASAMELLEAYQVFMAACCFKWVA 257
                      689***************************************************9.99999999999999999********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg +++Hi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a r
  OMERI12G01090.1 258 FTFANMAILRAAEGRSKLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAAAR 351
                      ***********************86538*************************************************************9999* PP

             GRAS 186 ledleleeL.rvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      +e+++ e+   v+p   +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  ++ h+++ F +rf eal ++salfd+l+a
  OMERI12G01090.1 352 WETVTAEDVvGVDPdpdEEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNSAHGAPFFPTRFREALFFFSALFDMLDA 445
                      ****99997567778899******************98877779************************************************99 PP

             GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      + p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r 
  OMERI12G01090.1 446 TTPEEGsRLRTVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRI 539
                      988876599****************************************************************999****************** PP

             GRAS 367 LvsvSaW 373
                      L++ SaW
  OMERI12G01090.1 540 LYAHSAW 546
                      ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.103139527IPR005202Transcription factor GRAS
PfamPF035141.9E-98165546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGPAAPPSEA ATAADDVVLP YISRILMEED MDDDMFFCLY PDHPALLEAQ QPFAQILLSS  60
SSGIAGELNS APMEDSAALM KGSKHGGDEL EAEAGRASKL MATPEEEEED DDGVGEMLEK  120
MMLNGDEDEA FHGEMDAPRV PAEKNGGKAA RRRRRRQGKG EVVDLRELLM SCAQAVASGN  180
RRSAGELLEQ IKRHSSPTGD ATERLAHYFA DGLEARLAGA SSLERRLLAS AEERASAMEL  240
LEAYQVFMAA CCFKWVAFTF ANMAILRAAE GRSKLHIVDY GGQYHGLQWP SLLQRLAERE  300
GGPPEVRMTL VGHPQPGFRP ARRLERTGRR LSNCARAFGL PFKFRAVAAA RWETVTAEDV  360
VGVDPDPDEE AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV FVQAVVNSAH  420
GAPFFPTRFR EALFFFSALF DMLDATTPEE GSRLRTVLER DVLRRAAVGV IAGEGAERVE  480
RPETYRRWQA RNRRAGLRQV AVEGDVVEAV RRRVRRRHHE EFVIEEDAGW LLQGWKGRIL  540
YAHSAWVVAE DGAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3717254726379Protein SCARECROW
5b3h_A3e-3717254725378Protein SCARECROW
5b3h_D3e-3717254725378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAK0730510.0AK073051.1 Oryza sativa Japonica Group cDNA clone:J033000F22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0F9B60.0A0A0E0F9B6_9ORYZ; Uncharacterized protein
STRINGOMERI12G01060.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-91SCARECROW-like 14