PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00660.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 463aa    MW: 50204 Da    PI: 6.9029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.71.3e-87344419374
             GRAS  19 laqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108
                      +a+++Lar   l   a+  g p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k+++++ N+aI+eave+
  OMERI12G00660.1   3 KATRCLARATGLaaaAAGGGGPRKRLAEAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVEN 94 
                      678888887777431333348************************99995444443..34555578899************************* PP

             GRAS 109 eervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....r 195
                      e+ vH++ ++   +q+ QW+ Ll++L  Rpegp   +R+T+v++    + e l +++e  ++ Aeelg++f+f+  v+ +ledl++++L    +
  OMERI12G00660.1  95 ESVVHVVGMSgpFTQPCQWIQLLHELRRRPEGPLrAVRLTVVHD----DGELLAKMAELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLcnvlE 183
                      *********86679****************777559********....***************************.7999****9999877779 PP

             GRAS 196 vkpgEalaVnlvlqlhrll........................................................................des 217
                      +k+gEal+V++ lqlhrll                                                                          +
  OMERI12G00660.1 184 IKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmaaasscppssgggggggggnvqykeddnsfqspgtplafvsppasTPH 277
                      999**************************************************************************************87444 PP

             GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..........eerikvErellgreivnvvace 301
                       +++ +  ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s          +er+ vEr+++g+ei+ v+   
  OMERI12G00660.1 278 FQMPAALASFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTSaashlwywppDERAQVERVVVGEEIKGVLLRD 371
                      455556677*********************************************9998888888899999999********************* PP

             GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ga+rrerh +l +W +r+e+aGF+ vpls++a  + + ++r+++ +  +  e  g+l+l+W++rpL+s+SaWr
  OMERI12G00660.1 372 GAHRRERHDRLWQWAARMETAGFTGVPLSYDAIRKGNDMVRRCGLRRCENRECGGCLLLCWSSRPLYSISAWR 444
                      ********************************************887888899*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.2421424IPR005202Transcription factor GRAS
PfamPF035144.5E-853444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEKATRCLAR ATGLAAAAAG GGGPRKRLAE AMVDCLARRL LRPVQAITDA LIDPSVYLDR  60
RSVRAARRGF FELSPFPKVA FVVGNRAIVE AVENESVVHV VGMSGPFTQP CQWIQLLHEL  120
RRRPEGPLRA VRLTVVHDDG ELLAKMAELV SDEAEELGME FQFHGVVGQL EDLDFSNLCN  180
VLEIKSGEAL VVSCTLQLHR LLAADDDAMY SSRSAHLNQM ASIAQLQHMA AASSCPPSSG  240
GGGGGGGGNV QYKEDDNSFQ SPGTPLAFVS PPASTPHFQM PAALASFLSA VRALSPKIVV  300
VAEQDADHNG VSFRKRFCEA LHHYAAVFDS LDAAAATTSA ASHLWYWPPD ERAQVERVVV  360
GEEIKGVLLR DGAHRRERHD RLWQWAARME TAGFTGVPLS YDAIRKGNDM VRRCGLRRCE  420
NRECGGCLLL CWSSRPLYSI SAWRPAASGG AGSGSERSDH ELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-14285445232380Protein SCARECROW
5b3h_A2e-14285445231379Protein SCARECROW
5b3h_D2e-14285445231379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9351540.0AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616103.10.0scarecrow-like protein 3
TrEMBLA0A0E0F9560.0A0A0E0F956_9ORYZ; Uncharacterized protein
STRINGOMERI12G00670.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-74scarecrow-like 3