PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00510.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 498aa    MW: 55872.2 Da    PI: 9.6616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52201561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k ++ +++    i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+++
  OMERI12G00510.1  20 LPPGFRFHPTDAEVILSYLLQKFQNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRANRATKEGYWKATGKDREIFK 112
                      79*************************888.56***************99999***************************************** PP

              NAM  95 k..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +          +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  OMERI12G00510.1 113 QptsyggnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 156
                      999999988877777***************************98 PP
2NAM129.23.2e-4018229332128
              NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...............kgelvglkktLvfyk 110
                        i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e++++               k++lvg+kktLvfy 
  OMERI12G00510.1 182 LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQpaavntssyggssndKKQLVGMKKTLVFYM 275
                      3499*************99999*****************************************99999888888887776777*********** PP

              NAM 111 grapkgektdWvmheyrl 128
                      grapkg+kt+Wvmhe+rl
  OMERI12G00510.1 276 GRAPKGTKTNWVMHEFRL 293
                      ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5417164IPR003441NAC domain
PROSITE profilePS5100548.90820172IPR003441NAC domain
PfamPF023657.8E-2621156IPR003441NAC domain
SuperFamilySSF1019419.55E-46172320IPR003441NAC domain
PROSITE profilePS5100535.026184320IPR003441NAC domain
PfamPF023656.3E-16194293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVETTSTSVV KLEQDGSLFL PPGFRFHPTD AEVILSYLLQ KFQNPSFTSL PIGEVDLNKC  60
EPWDLPSKAK MGEKEWYFFC HKDMKYPTGM RANRATKEGY WKATGKDREI FKQPTSYGGN  120
NKNNKQLVGM KKTLVFYMGR APKGTKTNWV MHEFRLHANL HNHHPNLRLN PKKFLNPSFT  180
SLPIGEVDLN KCEPWDLPSK AKMGEKEWYF FSHKDMKYPT GMRTNRATKE GYWKATGKDR  240
EIFRQPAAVN TSSYGGSSND KKQLVGMKKT LVFYMGRAPK GTKTNWVMHE FRLHANLHND  300
NPNIRLNPKD EWVVCKVFHK KGDDREAINK QQQQAQAAAV DLYSAGTPNN GSSVVEAGDD  360
DDDLFQLDSI IDPSIYFSNS SAANILSAPP NMYNSVVAAN YGASTTTTST TSAAGSFQQL  420
PSYYSLINKS SSSSNIFSWN NMPPPPVAGG SVHGIGSSYS LQHQAAMVKA LGDVIRLPNP  480
LGMPQYKLDD PYLWDSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441832115166NO APICAL MERISTEM PROTEIN
1ut4_B1e-441832115166NO APICAL MERISTEM PROTEIN
1ut7_A1e-441832115166NO APICAL MERISTEM PROTEIN
1ut7_B1e-441832115166NO APICAL MERISTEM PROTEIN
3swm_A2e-441832118169NAC domain-containing protein 19
3swm_B2e-441832118169NAC domain-containing protein 19
3swm_C2e-441832118169NAC domain-containing protein 19
3swm_D2e-441832118169NAC domain-containing protein 19
3swp_A2e-441832118169NAC domain-containing protein 19
3swp_B2e-441832118169NAC domain-containing protein 19
3swp_C2e-441832118169NAC domain-containing protein 19
3swp_D2e-441832118169NAC domain-containing protein 19
4dul_A1e-441832115166NAC domain-containing protein 19
4dul_B1e-441832115166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679220.0AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBankCT8295090.0CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.11e-175NAC domain-containing protein 45
SwissprotQ2RB331e-176NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A0E0F9350.0A0A0E0F935_9ORYZ; Uncharacterized protein
STRINGOMERI12G00530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-62Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]