PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G10380.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 423aa    MW: 43206.6 Da    PI: 7.1855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G10380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09249296455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OMERI11G10380.2 249 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 296
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17243313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-11243300No hitNo description
PROSITE profilePS5088815.802245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGGMHEAALM  60
DELASRLGGV CGGGLGGGGV PSPPSSSRYA SCYSTPVGSP CKPAPAPPAP SLLAARMSCL  120
AAGGHGGGKL SRAASSQSLL AEPASAGGVH QLPASDGSSS DAPSRKRKAP VAKSRGKDAA  180
TAIAKSPEPG TKAKKCKLSA DAAGDEDTKP VAGDAGHGGN GKGKVLDAAG EPPKDYIHVR  240
ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE  300
FLSMKLSTVN PQLDFDVDNF IPKDQANDPS MPAPLSLPPP PPSLSYSPEG ASPAICYASS  360
QGTAMQSVVT STKHLETAPT FANHHIIPVP SLDGFHSAHS QAGSCMWEDD LQSVVQMGFR  420
GNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-170CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0F5D80.0A0A0E0F5D8_9ORYZ; Uncharacterized protein
STRINGOMERI11G10030.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-54bHLH family protein