PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G06890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 399aa    MW: 42280.7 Da    PI: 7.5139
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G06890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.6e-32138192358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  OMERI11G06890.1 138 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 192
                      689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.6E-29139191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-30140190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-24141192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735141190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.57E-22289363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-32291364IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27302358IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVSILQLQTR TEASPASSAA TRIFAVRRQQ QQEQEGEEEE EEFEFQERMD LSGAQGELPI  60
PMHAAASPYA GMGAHGGAGG GHVVELHHHE HVGNNGQAMA MASPPPTNVA VAEQEGSPVA  120
GKKRGGMAVV GGGGGGVAVK YRECLKNHAA AIGGNATDGC GEFMPSGEEG SLEALKCSAC  180
GCHRNFHRKE ADDLDGDSCA AALRAAGGRH HHLLGPALPH HHHHHHHKNG GGGGLLVAGG  240
DPYGAAYAAA RALPPPPPPP PHGHHHHQII MPLNMIHTSE SDEMDVSGGG GGGGRGSSSS  300
SKKRFRTKFT AEQKARMLEF AERVGWRLQK LDDAMVHHFC QEIGVKRRVL KVWMHNNKHN  360
LAKKPLPSSP PPQIPMSMPP SPPPMPMPMP PSPPQLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-243013601675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876888.11e-150zinc-finger homeodomain protein 4
SwissprotQ53N871e-151ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0E0F4460.0A0A0E0F446_9ORYZ; Uncharacterized protein
STRINGOMERI11G06830.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.14e-27homeobox protein 21