PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G04470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 424aa    MW: 43966 Da    PI: 7.9735
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G04470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18356389134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  OMERI11G04470.1 356 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 389
                      *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17350400IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231350388IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-14352413No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15354389IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.12E-15355411No hitNo description
PfamPF003201.7E-16356390IPR000679Zinc finger, GATA-type
PROSITE patternPS003440356381IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFDSLDV  60
ELFLPRGPSR GAGEEDSKQG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGGGGGGR  120
GEDMETEALD VKPVVGVGAG GAMGAHVAGG VGAPGAFPES KQLMVPWPCA VGAGAGASGA  180
SAPGAVPDNR LLAFRDVRFD ALTAEGAAPG GERGKTIPDS VYKNGLPTLP GVRSATPTAP  240
PATPFRLEWD HAAAPSSSAT TTTPSDSSLS SPPSLTSVFP RIARVFPSRT KPRRRRSLRR  300
QHWSLICPLH LVPVAAAAAA AATADAPSIN DGGGGSYHRR VVGRQRNRQV RKDRRCSHCG  360
TSETPQWRMG PDGPGTLCNA CGIRSKMDRL LPEYRPSTSP SFNGNEHSNR HRKVLKLREK  420
KVRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286440.0AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F3670.0A0A0E0F367_9ORYZ; Uncharacterized protein
STRINGOMERI11G04400.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-20GATA transcription factor 7