PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G03580.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 472aa    MW: 52335.5 Da    PI: 4.54
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G03580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.53.7e-57493913354
             GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                       lLl+ Aeav++gd  la+ +  rl +      ++g  ++++Rla +f ++L++r+++ ++e+y   +p++ +    s ++ ++++ +e+sP++
  OMERI11G03580.1  49 GLLLAGAEAVEAGDSILASVAFLRLDDFlsgIPENGatSSFNRLAYHFNQGLRSRMSSASTECY---QPEPLP----SGNMLVHQIIQELSPFV 135
                      5899*********************9985542233334699*****************888888...455554....456778899******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      kf+h+t+NqaIl+a++g+  vH++D++i++G+QW +L+  La    g  s+R+T++  ++  ++ +  ++ + L++fA++l++pf++n + +++
  OMERI11G03580.1 136 KFAHFTTNQAILDATDGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKSFRLTAITTHADCDASTHDTVVRLLSEFADSLELPFQYNSICVHN 227
                      ******************************************7..4668*********887799999999*******************87776 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsle 272
                       ++l  +++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       a+ +s+sF e f+eal++++++f+s++
  OMERI11G03580.1 228 EDEL--HAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgASPSSASFIEFFFEALHHFTTVFESMA 315
                      5555..777777799******99777775..554444..69*******************7665553344666********************6 PP

             GRAS 273 aklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      + +   +     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++ + + v  +
  OMERI11G03580.1 316 SCFIGSNyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFGVVFK 391
                      6655444478899*********************999888.....5555..5********************999.44555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.48921392IPR005202Transcription factor GRAS
PfamPF035141.3E-5449391IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MVLDSNELHQ HDAPDVDVSI NCDDRIFGQE SVNLAAIQEE LLEEDSLSGL LLAGAEAVEA  60
GDSILASVAF LRLDDFLSGI PENGATSSFN RLAYHFNQGL RSRMSSASTE CYQPEPLPSG  120
NMLVHQIIQE LSPFVKFAHF TTNQAILDAT DGDMDVHVVD LNIGEGIQWS SLMSDLARCG  180
GKSFRLTAIT THADCDASTH DTVVRLLSEF ADSLELPFQY NSICVHNEDE LHAFFEDCKG  240
SVIVSCDTTS MYYKSLSTLQ SLLLVCVKKL QPKLVVTIEE DLVRIGRGAS PSSASFIEFF  300
FEALHHFTTV FESMASCFIG SNYEPCLRLV EMELLGPRIQ DFVVKYGSVR VEANASEVLE  360
GFMACELSAC NIAQARMLVG LFNRVFGVVF KKISLLMVYY ISLGKNDLRE PNKVIWSSLA  420
AGCGSHGIVV LAFYAADKLL EFKPKGIETY IHPAVERAHF HKEDRMWQEY EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-298739653372Protein SCARECROW
5b3h_D4e-298739653372Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205340.0AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617104.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0E0F2T90.0A0A0E0F2T9_9ORYZ; Uncharacterized protein
STRINGOMERI11G03470.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.19e-29GRAS family protein