![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI11G03470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 686aa MW: 70192.9 Da PI: 6.477 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 384 | 421 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + OMERI11G03470.1 384 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 421 664459******************************88 PP | |||||||
2 | BELL | 118.3 | 3.6e-38 | 245 | 316 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+ OMERI11G03470.1 245 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 316 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-61 | 160 | 314 | IPR006563 | POX domain |
Pfam | PF07526 | 2.3E-50 | 168 | 313 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 362 | 425 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 365 | 429 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.80E-13 | 365 | 426 | No hit | No description |
SuperFamily | SSF46689 | 3.64E-17 | 366 | 432 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-29 | 368 | 431 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 382 | 421 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 686 aa Download sequence Send to blast |
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AGYGDAAAAA APGAAAANMM LLNSAVTSMT 60 PVSFGHQPSP SSSSAAQHFV GIPLQPPASG YNLWTPAAAT GAGDMSPPTP QHQHQQAHGG 120 GGAAGVSAVL SLSSREAAPP VTVAALVAAG DEGKYLQAVQ GAASQGQMVM SSKYLKAAQE 180 LLDEVVSVSK GVDDAKAAAA AAAAKSPASV KKKEDSEGVS GGGTEDGSGA KSGGAPPPPE 240 MSTAERQELQ MKKGKLINML DEVEQRYRQY HQQMQVVVAS FEAVAGGGSA RTYTALALRT 300 ISRQFRCLRD AIAGQVRAAS RALGEGDADG GCGGRTVGSR LRYIDHQLRQ QRALQQLGMM 360 QSSAWRPQRG LPERSVSILR AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV 420 RLWKPMVEEM YLEETKDQDG GGGAGAGDEG SRPGGSKGGA GGVNGGVVDS AAKMDSKAAH 480 MESGGGGGVH PSLLELAGDH QAQAGFYDDD DEEDGGAAAA LQQKLKKART EEQQQVAFHV 540 SDVATLHAHA AAAAAAAARH DEVSHRELLM KFMESGSAAA RDEHHGGGGG GGSGVGYSLF 600 APAPYGQFAT EQFAFAGHGG GGGGGGVSLT LGLPHGAEQT ASFLMTSSNG SDGAGHVAGG 660 GGGGGYDMNM QGTKSFAAQL MRDFVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 371 | 429 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 371 | 429 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 371 | 429 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 371 | 429 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC133217 | 0.0 | AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616922.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616923.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616924.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616925.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-115 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0E0F2S2 | 0.0 | A0A0E0F2S2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G03350.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35940.3 | 7e-88 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|