PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G03460.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 887aa MW: 96293.6 Da PI: 6.0124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G03460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00072	692	729	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq OMERI11G03460.1 692 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 729 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.2E-17	5	113	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.493	679	728	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-4	692	741	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence Send to blast
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG 60 CAAAAAADTM TICSLVNKVM ASQVHVVGEG TVGRAAFTGN HQWIIHGTAN DHGIPSEVAA 120 EMSYQFRLGI QIISKPIFHA IVNSECAVAN LWQLSVISSS EKQIKNSSSQ QGRSRPLHGA 180 SNVQSTENRS KLFSQFPMTC EQYNHPDTMA VSGSTSLNAC MNGSLLKIAQ LNGQAVREHI 240 VYSKPDVRFI QQVYRDGQLG SNAQSIAMSS DLISSSLRSV QKQPLLMNNI SQLEYGDGAD 300 TSADLQKNVL LKPPVCLDPF IHDRNINISH GIAEVSNIIN DHGNFDFLSG GARVVRANLC 360 TSATSQVLDR RSHSVSGMLL HRQPIVSCEV PQSSEFSTKM GSLERGSFQI SSAPSSESDV 420 QISNGLNTSI SQENQLSVSN HICQDQKING VNDLSATLST ERMNNMDGCK PPGLSLEKTS 480 PLFMEQSVEN DLFDILGPQF HHLCHNAGAD LVLWTDAKPE SSDRDVPESS IHADSAPLFS 540 SRDNELYSGI FSLTDTDQLL DAVISNVNPA GKQSSDDSAS CKTSLTDIPA TSYLCSKEMK 600 QCGSSGVPSV LIKNESAQFI KQPCLAENAE DGCLSQNNGI HKSQIRLWIE SGQSMKCESA 660 SASNSKGLDT PSKANRKRSR PGESPKPRPK DRQLIQDRIK ELREMVPNGA KCSIDALLEK 720 TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV 780 EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGAM EARKSKIWAR FTVEANRDVT 840 RMEIFLSLVR LLGPNCDSSG AVENANNVNM PLGLAHQPVI PATGRIQ

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence Send to blast

MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAAAADTM TICSLVNKVM ASQVHVVGEG TVGRAAFTGN HQWIIHGTAN DHGIPSEVAA  120
EMSYQFRLGI QIISKPIFHA IVNSECAVAN LWQLSVISSS EKQIKNSSSQ QGRSRPLHGA  180
SNVQSTENRS KLFSQFPMTC EQYNHPDTMA VSGSTSLNAC MNGSLLKIAQ LNGQAVREHI  240
VYSKPDVRFI QQVYRDGQLG SNAQSIAMSS DLISSSLRSV QKQPLLMNNI SQLEYGDGAD  300
TSADLQKNVL LKPPVCLDPF IHDRNINISH GIAEVSNIIN DHGNFDFLSG GARVVRANLC  360
TSATSQVLDR RSHSVSGMLL HRQPIVSCEV PQSSEFSTKM GSLERGSFQI SSAPSSESDV  420
QISNGLNTSI SQENQLSVSN HICQDQKING VNDLSATLST ERMNNMDGCK PPGLSLEKTS  480
PLFMEQSVEN DLFDILGPQF HHLCHNAGAD LVLWTDAKPE SSDRDVPESS IHADSAPLFS  540
SRDNELYSGI FSLTDTDQLL DAVISNVNPA GKQSSDDSAS CKTSLTDIPA TSYLCSKEMK  600
QCGSSGVPSV LIKNESAQFI KQPCLAENAE DGCLSQNNGI HKSQIRLWIE SGQSMKCESA  660
SASNSKGLDT PSKANRKRSR PGESPKPRPK DRQLIQDRIK ELREMVPNGA KCSIDALLEK  720
TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV  780
EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGAM EARKSKIWAR FTVEANRDVT  840
RMEIFLSLVR LLGPNCDSSG AVENANNVNM PLGLAHQPVI PATGRIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133217	0.0	AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616921.1	0.0	transcription factor LHW isoform X1
TrEMBL	A0A0E0F2S1	0.0	A0A0E0F2S1_9ORYZ; Uncharacterized protein
STRING	OMERI11G03340.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	4e-54	conserved peptide upstream open reading frame 7