PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G01580.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 338aa    MW: 36348.3 Da    PI: 5.8144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G01580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.7e-23132192359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+a  + +  ++ Y ++H+++
  OMERI11G01580.1 132 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNAGGGAAgYTVAYISQHTCK 192
                      9************************9888889***********8776537899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-24115193IPR003657WRKY domain
SuperFamilySSF1182901.96E-21123192IPR003657WRKY domain
SMARTSM007742.4E-31130193IPR003657WRKY domain
PfamPF031062.6E-22132192IPR003657WRKY domain
PROSITE profilePS5081119.52132173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEAYCMMMV ERERELVAEL RHLLFPSPSP TPTTPASHST TALGAGDDEC CLPPGLTTTT  60
TVSGGGGRRW GRKRVRRNND NVKLLQADDD QEGVVADHGD ANAKPLPNFT KTRRRKQQTT  120
TSTMVTTVPD FDGYQWRKYG QKQIEGAMYP RSYYRCTNST NQGCLAKKTV QRNAGGGAAG  180
YTVAYISQHT CKSIEPSLPP VILDTTNNHH PPAAAPVVTA AAESAARSPA TSSSSDMIMT  240
STSGEIGNWS GQHGAYSCRQ LITADEDCCW DTPATTTTSA SDGGNSSTCA DQEMELLSGP  300
IRSPVHIAVE GNWVDDLLLV SDGPIDISNA NITHLFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-141321921069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116TRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-162AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005001e-162BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-162CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619481.11e-162WRKY transcription factor SUSIBA2
TrEMBLA0A0E0F1X90.0A0A0E0F1X9_9ORYZ; Uncharacterized protein
STRINGORGLA12G0007700.11e-164(Oryza glaberrima)
STRINGOBART12G00860.11e-164(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.12e-14WRKY DNA-binding protein 43