 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI11G01540.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 340aa MW: 36607.6 Da PI: 6.414 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI11G01540.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 71.9 | 8.7e-23 | 129 | 189 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59
Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+a + + ++ Y ++H+++
OMERI11G01540.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNAGGGAAgYTVAYISQHTCK 189
9************************9888889***********8776537899******97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MEEAYCMMLV GRERELVAEL RHLLFPSPSP TTPASHSTTA LAGDDECLPP GLTTTTTVSG 60
GGGRRRGRKR VRRDNDNVKL LLQADDDQEA VVADHGDANA KPLPNFTKTS RRKQQTTTST 120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN AGGGAAGYTV 180
AYISQHTCKS IEPSLPPVIL DTTVRTTNNH QQPAAAPVVT AAAESPAATS SSSSNMVMTS 240
SSSTSGDTGN WSGQHGAYAC RQMIAADEEH CCWDTPATTT TTSGSDGGNS TCAEDIELLS 300
RPIRSPMHIA AEGNWMDDLR LVTDGLIDMS NSSITHFLTF
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP014968 | 1e-169 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | BX000500 | 1e-169 | BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | CP012620 | 1e-169 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
