PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G01480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 337aa    MW: 37548.8 Da    PI: 5.77
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G01480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.8e-23139200259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k++++++ ++p ++++tY++eH+++
  OMERI11G01480.1 139 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKDnNNPPMFQVTYSNEHTCN 200
                      8***************************99999*******976516899***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.48E-21131200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-23134200IPR003657WRKY domain
SMARTSM007743.2E-33138201IPR003657WRKY domain
PROSITE profilePS5081116.478139197IPR003657WRKY domain
PfamPF031069.1E-25139199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAVTESVCLS EEHQAVAVRE VTQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL  60
SVMNQPHASS SSAAAVPVMS MIKAEAATPV NSSSPAADVA ADSHVVGKPR RSSSAAKRRR  120
INGEDKSSSW YHLTPVPHED GFQWRKYGEK KIQGTHFTRS YFRCTYRDDR GCQATKQIQQ  180
KDNNNPPMFQ VTYSNEHTCN FVCTTTRLIN NINNPAALHN LTANPNGHHD SDDDDDTIFT  240
KMIKQEEQAA WLPPPPPADL ATISNNFDET PGLHVCQEVP PSSNSSVISH YADEFDHHQM  300
LETTVMEEAL GLGADLDDPY FYDPNLLLIY ESLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-13139199968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616433.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0F1W90.0A0A0E0F1W9_9ORYZ; Uncharacterized protein
STRINGOMERI11G01500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-19WRKY family protein