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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OMERI10G13220.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 329aa MW: 36087.3 Da PI: 5.0238 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI10G13220.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 158.6 | 2.6e-49 | 8 | 130 | 1 | 122 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+ppGfrFhPtdeelv++yL+kkv+++k++l +vi++vd+y++ePwdL++ ++ e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+
OMERI10G13220.1 8 VPPGFRFHPTDEELVSYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEhcRIGYeEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDKA 100
69****************************.9***************953533332566*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWv 122
v + + +l+g++ktLvfykgrap+g+ktdW+
OMERI10G13220.1 101 VRE-RCRLIGMRKTLVFYKGRAPNGHKTDWI 130
**9.8899**********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MVIMESCVPP GFRFHPTDEE LVSYYLRKKV ASQKIDLDVI RDVDLYRIEP WDLQEHCRIG 60
YEEQSEWYFF SYKDRKYPTG TRTNRATMTG FWKATGRDKA VRERCRLIGM RKTLVFYKGR 120
APNGHKTDWI EEGWVVCRAF KKRTMQPPRS SIGAWEASYS YHDPAVFVGG GEHFKQEAAA 180
ELDGVAAAAA AAAGANAFLR YSTGRLPELP QLESPPLPSQ GSQAASAVVD GEEDNADSSR 240
RPGGAAAAAV TTDWRAFDKF VASQLSPEEQ HTCRATDDDD MAALLLLDGG GQEDDAGRWL 300
GSAGLLSAVA ADATTDCGLG TSCVPGDIN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC092389 | 0.0 | AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence. |
| GenBank | AC113948 | 0.0 | AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence. |
| GenBank | AK106313 | 0.0 | AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | JN634073 | 0.0 | JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds. |
