PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G08610.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 131aa MW: 14978 Da PI: 8.7624 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00042 | 26 | 57 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++++ + +K + a++L +A++YIk L OMERI10G08610.5 26 DKITALQQIVSPF-----GKTDTASVLYEAINYIKWL 57 7888899999887.....8***************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.772 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-10 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 23 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.28E-4 | 26 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MAAVARHRTT TTEQYWSQVP KVKLGDKITA LQQIVSPFGK TDTASVLYEA INYIKWLHEQ 60 VQLLSDPYMK SSSSKDYNAW GGLDRKEKAD AEVDLRSRGL CLVPVSCTPQ VYRDNNGPDY 120 WTPPYRSCLY R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836118 | 0.0 | CT836118.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122B23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658548.2 | 1e-80 | PREDICTED: uncharacterized protein LOC102714306 | ||||
Swissprot | Q9FYJ6 | 2e-44 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | A0A0E0EYE6 | 2e-93 | A0A0E0EYE6_9ORYZ; Uncharacterized protein | ||||
STRING | OS07T0471900-00 | 4e-80 | (Oryza sativa) | ||||
STRING | OB07G19980.1 | 3e-79 | (Oryza brachyantha) | ||||
STRING | ORGLA07G0117600.1 | 3e-80 | (Oryza glaberrima) | ||||
STRING | OBART07G13960.1 | 5e-81 | (Oryza barthii) | ||||
STRING | LPERR07G11670.1 | 2e-80 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 4e-46 | bHLH family protein |