PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G06670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 252aa    MW: 27277.7 Da    PI: 9.0193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G06670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.9e-103280255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGV +   +grW+  I   +      +r+ +g +gt+eeAa a+++a +++ g
  OMERI10G06670.1 32 KYKGVAR-TADGRWRGFITNkF-----GRRYGVGDHGTPEEAALAHDRAILAILG 80
                     8****95.559****8877744.....5*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-83291IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-93290IPR016177DNA-binding domain
SMARTSM003800.00183297IPR001471AP2/ERF domain
PfamPF008473.4E-73279IPR001471AP2/ERF domain
PROSITE profilePS5103211.8383291IPR001471AP2/ERF domain
CDDcd000184.07E-153293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLAGAVRRHD AATRRRAVAG AGDDDDVHAP VKYKGVARTA DGRWRGFITN KFGRRYGVGD  60
HGTPEEAALA HDRAILAILG AHASPAALNF RAAFSDTELR FLRGPHAPSR RAAGVVAAVM  120
RGAAFDAELE RFAARAYDAH TDPELALDVA AFRLATRDAG GAPPPQPELR DAERAAFVAA  180
ARNKVHDAAW LRSYLRRRRL VGATFEDENR WPPVVPPAVV DVGDGFAGNE LVYLPYGSCH  240
VDEMMIRSPP QD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0218930.0AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0EXL11e-176A0A0E0EXL1_9ORYZ; Uncharacterized protein
STRINGOMERI10G06410.11e-177(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718