PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G04260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 231aa    MW: 25724.8 Da    PI: 6.5766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G04260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.67.9e-211778259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                      Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v++++  dp +  +tY   H+++
  OMERI10G04260.1 17 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 78
                     7***************************99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.41E-221279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-221578IPR003657WRKY domain
SMARTSM007741.6E-331679IPR003657WRKY domain
PROSITE profilePS5081114.6531780IPR003657WRKY domain
PfamPF031069.3E-241877IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQEGHPTCVN LTPIPHTDGH LWRKYGEKKI KNSSFPRLYY RCSYRDDRNC MATKVVQQEN  60
DADPPLYRVT YIHPHTCNPS PPAPTPAPAH VFTEPPPAKA EVHHAVLFRF SSTAGGHTAN  120
NAVHRQQWQP AATMAAGAQA QLSMTMSDDE REQPAAAIRS APPARRLSMF RAVVDGLRQM  180
RSSAPPTPSS LTAVDDGWDT FSSFDLDTCE FSVDDELLCG DHMYFPDSMQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1518771068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.21e-149probable WRKY transcription factor 32
TrEMBLA0A0E0EWM21e-173A0A0E0EWM2_9ORYZ; Uncharacterized protein
STRINGOMERI10G04170.11e-173(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.15e-17WRKY DNA-binding protein 66