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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G00690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 353aa MW: 39703.8 Da PI: 11.3232 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 288.6 | 2.7e-88 | 1 | 237 | 65 | 296 |
GAGA_bind 65 kalae.rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkk 151 ++++ +++++++r+ k+l+ l v ++ + +pvg+++++ t+++ +lq++ e pql++++ + ++ee+++ + +ee++ + + +k OMERI10G00690.1 1 MWMHMqQQHHHHPREPKVLHTLSVGHGGHiahHDHPVGYGMMPATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPK 92 5888725667789***********99988887889**************99997666799*99999978999999888877755..56788999 PP GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244 krq++++pk+++ kk+kk +++++++ +++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPL OMERI10G00690.1 93 KRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPL 185 99****************.9999********999************************************************************ PP GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 +s krrgaRiagrKmS+gafkk+LekLa+e y+l+np+DLk++WAkHGtnk OMERI10G00690.1 186 LMSMKRRGARIAGRKMSHGAFKKVLEKLASEVYNLNNPIDLKTFWAKHGTNK 237 ***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.2E-109 | 1 | 237 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.1E-91 | 5 | 237 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MWMHMQQQHH HHPREPKVLH TLSVGHGGHI AHHDHPVGYG MMPATHTLRM LQHQPEPQPQ 60 LQHPPSPPHP KEECISPPLM EENVPVKPPP PKKRQQGRQP KVPRPKKPKK PAAPREDGAP 120 PSAPAPRRRG PRKNIGMVIN GIDLDLSRIP TRICSCTGAP QQCYRWGAGG WQSACCTTTV 180 STYPLLMSMK RRGARIAGRK MSHGAFKKVL EKLASEVYNL NNPIDLKTFW AKHGTNKEEE 240 HEVRVKAFQM EECGRRRHHR WALPRCHGAR ISSSFVIPPI DSGVVGDGFT LRLRLRGWRR 300 QPYASLGMAA PQRRTWSGTT TMVAAKLGDG RRRARNCGSE VGVGERGGKQ RRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. | |||
GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY570520 | 0.0 | AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612725.1 | 1e-119 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612727.1 | 1e-119 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612730.1 | 1e-119 | barley B recombinant-like protein B isoform X1 | ||||
Refseq | XP_015612731.1 | 1e-119 | barley B recombinant-like protein B isoform X1 | ||||
Swissprot | P0DH88 | 1e-120 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-120 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0EVC2 | 0.0 | A0A0E0EVC2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G00650.1 | 1e-173 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 4e-52 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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