PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G11370.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 478aa    MW: 50684.8 Da    PI: 8.4782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G11370.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-13326371655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  OMERI09G11370.6 326 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 371
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15323379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.34E-13324375No hitNo description
Gene3DG3DSA:4.10.280.105.0E-14325378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGQLQLQQ  60
QRPASPDHAA DTVLARFLAG HGGHDNKPPR PAAHFAPPED SMASQHQQQQ LMYQSHQQQQ  120
MASAMEGLYR TVSSGGTEST AAAAGNSLLR QSSSPAGFLN HLTMDNGYGN MLRAGMGGGG  180
GGGDPRLKGQ LSFSSRQGSV MSQISEMGSE DEELAAGGGG ASPEAGSNGA RGGYGGYAMG  240
SSAWEEPSPP ATSLLPDSSL PSSKRPRDDL PRQLSLPASK NSSKPPSSAS AAASPEMAAI  300
EKFLQFQDAV PCKIRAKRGC ATHPRSIAER VRRTRISERI RKLQELVPNM EKQTNTADML  360
DLAVDYIKEL QKQVKPFQLH LLGEQAETLR RLNQSINRHD RCSSAQHTNG RKRHAAEASA  420
PAVFLSFVSF FADEFAGLSG KLNMRALDFG AVACILQSSQ DDGLGSHMVV VEYCSCKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307420.0CT830742.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA047O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.10.0transcription factor bHLH130
TrEMBLA0A0E0ETG60.0A0A0E0ETG6_9ORYZ; Uncharacterized protein
STRINGOMERI09G11210.70.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-31bHLH family protein