PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G10560.7
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 32579.8 Da    PI: 6.5176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G10560.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.64.5e-182978255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OMERI09G10560.7 29 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 78
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-192495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-242598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-162582No hitNo description
PROSITE profilePS5088816.9522777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-152978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-133383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHSELTVRVD GKGGSCSGSG TDQRPSSPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK  60
RDKATFLLEV IEYIRFLQEK VQKFEASVPE WNQENAKILP WSKGQNPGDD LPDPSQFIRN  120
GSSSGYNFTG KPDDNHNMVT SAAASGAAEL VETDRAASVS YRSAETPTNI TNNVTSQAQA  180
QWASPAGVDD CAMNSEMLNN QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQASI  240
SVQINLGKRA VKRPGADGSS SSKELPSTSA NNENMGHQLT MLGGGTEELP HPTKRHKSGN  300
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612525.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0E0ET470.0A0A0E0ET47_9ORYZ; Uncharacterized protein
STRINGORUFI09G14830.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-54BES1-interacting Myc-like protein 2