PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G10560.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 492aa    MW: 52443.9 Da    PI: 7.3836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G10560.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.2e-18220269255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OMERI09G10560.5 220 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 269
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-19215286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-16216273No hitNo description
Gene3DG3DSA:4.10.280.105.1E-24216289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPSPSQ GFFLRTHDFL QPLEKPTPAP  60
APPPTSQQQQ QAFPGGIGTF SISHVAGARP VAAAVVKAEP TPFVLWGQPA AAAAAAAHPV  120
AALGHHHHHH HQWTLPFAGV GQVAATAARQ QQQERKGRVG GGGFMDSGSR SSGGAGFDDD  180
DGVAARREVS SSLKELTVRV DGKGGSCSGS GTDQRPSSPR SKHSATEQRR RSKINDRFQI  240
LRELLPHSDQ KRDKATFLLE VIEYIRFLQE KVQKFEASVP EWNQENAKIL PWSKGQNPGD  300
DLPDPSQFIR NGSSSGYNFT GKPDDNHNMV TSAAASGAAE LVETDRAASV SYRSAETPTN  360
ITNNVTSQAQ AQWASPAGVD DCAMNSEMLN NQQLAIDEGT ISLSSQYSQQ LLGTLTHALE  420
SSGVDLSQAS ISVQINLGKR AVKRPGADGS SSSKELPSTS ANNENMGHQL TMLGGGTEEL  480
PHPTKRHKSG NS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLA0A0E0ET430.0A0A0E0ET43_9ORYZ; Uncharacterized protein
STRINGORUFI09G14830.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-51BES1-interacting Myc-like protein 2