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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G10560.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 492aa MW: 52443.9 Da PI: 7.3836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.2e-18 | 220 | 269 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq OMERI09G10560.3 220 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 269 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-19 | 215 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.32E-16 | 216 | 273 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-24 | 216 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.952 | 218 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-15 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 224 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPSPSQ GFFLRTHDFL QPLEKPTPAP 60 APPPTSQQQQ QAFPGGIGTF SISHVAGARP VAAAVVKAEP TPFVLWGQPA AAAAAAAHPV 120 AALGHHHHHH HQWTLPFAGV GQVAATAARQ QQQERKGRVG GGGFMDSGSR SSGGAGFDDD 180 DGVAARREVS SSLKELTVRV DGKGGSCSGS GTDQRPSSPR SKHSATEQRR RSKINDRFQI 240 LRELLPHSDQ KRDKATFLLE VIEYIRFLQE KVQKFEASVP EWNQENAKIL PWSKGQNPGD 300 DLPDPSQFIR NGSSSGYNFT GKPDDNHNMV TSAAASGAAE LVETDRAASV SYRSAETPTN 360 ITNNVTSQAQ AQWASPAGVD DCAMNSEMLN NQQLAIDEGT ISLSSQYSQQ LLGTLTHALE 420 SSGVDLSQAS ISVQINLGKR AVKRPGADGS SSSKELPSTS ANNENMGHQL TMLGGGTEEL 480 PHPTKRHKSG NS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | A0A0E0ET43 | 0.0 | A0A0E0ET43_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI09G14830.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-51 | BES1-interacting Myc-like protein 2 |