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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G08870.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 43015.3 Da PI: 4.5905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 139 | 188 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g OMERI09G08870.2 139 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 188 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.36E-32 | 139 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 139 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 139 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 139 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 139 | 197 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-11 | 140 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-12 | 140 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 162 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MCGGAIISGF IPPSAAAAAA AAAAKKQQGR RVTADVLWPG MLRKGKAAVV EEDFEADFRE 60 FERGMSDDEA EGGGGEEEEE DDDDVVVVVP PPAAAAAARF VVRAAAKAAP PTADGMLTTK 120 LVQHDGPTAR SAKRKRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD 180 AEARKIRGKK AKVNFPDEPA VAQKLSLKQN AAKQEKLAPP LKTCGDDAFF QLNSSDNDLF 240 AMLAKVPAKP AEPVDLMPPV KPLASTETFE MNMLSDTSSN SFGSSDFGWE DDTLTPDYTS 300 VFVPNAAMPA YGEPAYLTGG APKRMRNNYG IAVPQGNGMP NLAQNMPTFD PEMKYLPLPY 360 VESSSDESMD NLLQNDATQD GASNEGIWSL DELLMAAGAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 138 | 196 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 139 | 196 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 139 | 196 | 5 | 63 | ATERF1 |
5wx9_A | 3e-19 | 139 | 198 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ417199 | 0.0 | DQ417199.1 Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds. | |||
GenBank | EU837256 | 0.0 | EU837256.1 Oryza sativa Japonica Group clone KCS059H07 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611873.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0ESI4 | 0.0 | A0A0E0ESI4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G08700.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 3e-27 | related to AP2 12 |