PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G08220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 33226 Da PI: 6.4174 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.3 | 1.7e-29 | 140 | 199 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+r+aed ++++ tYegeHnh OMERI09G08220.1 140 VKDGYQWRKYGQKVTRDNPYPRAYFRCAFApSCPVKKKVQRCAEDRSMLVATYEGEHNHA 199 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-30 | 131 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.763 | 135 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 138 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-34 | 140 | 200 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDDDGDGSSS PTDDSAAAGL LPLFSRSPAE DLEEKLRRAT EENARLTRAL DAILAGHHAH 60 QRALLAPSPS PPPPSATARA PSVSTSCAAR EDAAPAVAAD AASTACPSRQ QPPTAEPRPK 120 VRTVRVRADA TDANSMAETV KDGYQWRKYG QKVTRDNPYP RAYFRCAFAP SCPVKKKVQR 180 CAEDRSMLVA TYEGEHNHAL STQTAEFVAS GCTTSQHAGG SSTSPLPCSI SINSSGRTIT 240 LDLTNQAGSG SIASCGVEAA AVSGELVTVL SPELRRHLVE EVVQVLKNDA EFVEAVTNAV 300 AARVVDQIPH IPVHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 135 | 200 | 12 | 76 | Probable WRKY transcription factor 4 |
2ayd_A | 3e-20 | 135 | 200 | 9 | 73 | WRKY transcription factor 1 |
2lex_A | 4e-20 | 135 | 200 | 12 | 76 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}. | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067834 | 0.0 | AK067834.1 Oryza sativa Japonica Group cDNA clone:J013121C08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610755.1 | 0.0 | WRKY transcription factor WRKY62 | ||||
Swissprot | B8BF91 | 0.0 | WRK62_ORYSI; WRKY transcription factor WRKY62 | ||||
Swissprot | Q6EPZ0 | 0.0 | WRK62_ORYSJ; WRKY transcription factor WRKY62 | ||||
TrEMBL | A0A0E0ES92 | 0.0 | A0A0E0ES92_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G08070.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12921 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 9e-41 | WRKY DNA-binding protein 18 |