PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G08210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 390aa    MW: 41852.3 Da    PI: 8.018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G08210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.3e-29226285159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  OMERI09G08210.1 226 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 285
                      58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934221287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28222287IPR003657WRKY domain
SuperFamilySSF1182902.75E-25223287IPR003657WRKY domain
SMARTSM007742.8E-34226286IPR003657WRKY domain
PfamPF031063.8E-24227285IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQIKYHTVSL SPPICIAPPI PHEPFKCLYN CTWLCLFLFD YSSSRAQQQR DASCSWSSSS  60
MDAAWRGGVG CSPVCLDLCV GLSPVREPSA ARHELLDRPA GCRGGGDSKA ITNDEAKILE  120
AKVTQMSEEN RRLTEVIARL YGGQIARLGL DGSASPPRPV SPPLAGRKRS RESMETANSC  180
DANSNRHQGG DADHAESFAA DDGTCRRIKV SRVCRRIDPS DTSLVVKDGY QWRKYGQKVT  240
RDNPSPRAYF RCAFAPSCPV KKKVQRSAED SSLLVATYEG EHNHPHPSPR AGELPAAAAA  300
AGAGGSLPCS ISINSSGPTI TLDLTKNGGA VQVVEAAHPP PPPDLKEVCR EVASPEFRTA  360
LVEQMASALT SDPKFTGALA AAILQKLPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202252871374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0599660.0AK059966.1 Oryza sativa Japonica Group cDNA clone:006-211-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610695.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK50.0WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A0E0ES910.0A0A0E0ES91_9ORYZ; Uncharacterized protein
STRINGOMERI09G08060.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-54WRKY DNA-binding protein 40