PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G08190.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 504aa MW: 49914.8 Da PI: 7.0038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G08190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	268	316	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq OMERI09G08190.1 268 HSIAERLRRERIAERMKALQELVPNA--NKLMQTDKASMLDEIIDYVKFLQ 316 99*********************7..48888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.81E-16	261	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-13	261	320	No hit	No description
PROSITE profile	PS50888	16.787	263	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-15	267	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-9	268	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-13	269	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANASGGGV HDDFLDQMLS SLPPSAWPDL 60 AAGKAAEDDA EGMHHHQQQQ QQQFGGPYDE SAMLASRLRQ HQISGGGGGG GGGAAAVKQM 120 VLQQLADLRQ GHHMMLQGLG GRSPAGGGGG DGGLLLPLTL GSGGSGGDVQ ALLKAAAANS 180 AGGGDAGGVY GGGFAGSLHQ QQQHFQPHPQ TAPTMPTQSF GGGGGGGGGG TASGGGAAQA 240 QAGAAGGGAP APPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKLMQTD 300 KASMLDEIID YVKFLQLQVK ASTYTKLLIH VLSMSRLGGA AAVAPLVADM SSEGRGGGAA 360 NGGAPAAAAA AGSDSLTVTE QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH 420 LRPPVVAAAQ QFPAGLGAAA HHHQLSAAAA AMRGHLPGLN ADGSVPASPS MSVLTAQSAM 480 ANGGGGAADG DGSQPKDAAS VSKP

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANASGGGV HDDFLDQMLS SLPPSAWPDL  60
AAGKAAEDDA EGMHHHQQQQ QQQFGGPYDE SAMLASRLRQ HQISGGGGGG GGGAAAVKQM  120
VLQQLADLRQ GHHMMLQGLG GRSPAGGGGG DGGLLLPLTL GSGGSGGDVQ ALLKAAAANS  180
AGGGDAGGVY GGGFAGSLHQ QQQHFQPHPQ TAPTMPTQSF GGGGGGGGGG TASGGGAAQA  240
QAGAAGGGAP APPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKLMQTD  300
KASMLDEIID YVKFLQLQVK ASTYTKLLIH VLSMSRLGGA AAVAPLVADM SSEGRGGGAA  360
NGGAPAAAAA AGSDSLTVTE QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH  420
LRPPVVAAAQ QFPAGLGAAA HHHQLSAAAA AMRGHLPGLN ADGSVPASPS MSVLTAQSAM  480
ANGGGGAADG DGSQPKDAAS VSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	GGRSPAGGG
2	272	277	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005784	0.0	AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610784.1	0.0	transcription factor UNE12 isoform X1
Swissprot	Q9ZUG9	2e-73	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0ES90	0.0	A0A0E0ES90_9ORYZ; Uncharacterized protein
STRING	OMERI09G08040.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-43	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]