PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G05950.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 366aa MW: 38058 Da PI: 5.1339

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G05950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.6	3.1e-36	73	172	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l ael OMERI09G05950.1 73 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARANDPVGGAARVVVELCRQYEMLFAEL 166 7******************************************************************************************* PP DUF260 95 allkee 100 a+++++ OMERI09G05950.1 167 AAVQHH 172 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.667	72	173	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-33	73	170	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGGAPL PPRAPPRVGV 60 GGGGGSGVGQ SQACAACKYQ RRKCNADCPL ARYFPADEQR RFLNAHHLFG VSKIQKTLRD 120 TPPELHADAM QALTFEANAR ANDPVGGAAR VVVELCRQYE MLFAELAAVQ HHLKLCRQQH 180 AAAAAANDPL VANVDPLADP AAEMLFAGAV VPNQNDDAMV DAFYADQQTA GDGDQEQYLV 240 KDEAQAAQPP PQQPYEYLNY GTAGDEGSSH AWYTGNGGDA DASPPMGLSD QLQQCQIGAV 300 APFDVKPELP ATMEHGGSVF VEQPEQKILP AAGSSSSAAA APAPAHCQLE LGCSSNAWKV 360 GTHVIN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGGAPL PPRAPPRVGV  60
GGGGGSGVGQ SQACAACKYQ RRKCNADCPL ARYFPADEQR RFLNAHHLFG VSKIQKTLRD  120
TPPELHADAM QALTFEANAR ANDPVGGAAR VVVELCRQYE MLFAELAAVQ HHLKLCRQQH  180
AAAAAANDPL VANVDPLADP AAEMLFAGAV VPNQNDDAMV DAFYADQQTA GDGDQEQYLV  240
KDEAQAAQPP PQQPYEYLNY GTAGDEGSSH AWYTGNGGDA DASPPMGLSD QLQQCQIGAV  300
APFDVKPELP ATMEHGGSVF VEQPEQKILP AAGSSSSAAA APAPAHCQLE LGCSSNAWKV  360
GTHVIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-20	69	173	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-20	69	173	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005675	0.0	AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	0.0	protein IAL1
TrEMBL	A0A0E0ERF9	0.0	A0A0E0ERF9_9ORYZ; Uncharacterized protein
STRING	OMERI09G05700.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	7e-28	LOB domain-containing protein 7