PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G02350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 364aa    MW: 41452.6 Da    PI: 7.6341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G02350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.21e-153574339
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE CS
             WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve 39
                     Dgy+WrKYGqK++ +++++rsYY+Ct +   gC+++k + 
  OMERI09G02350.1 35 DGYEWRKYGQKSISKTKHSRSYYKCTNQkeqGCMATKTMS 74
                     9*************************998889****9875 PP
2WRKY58.21.6e-18197262359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST......TEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp......kvveitYegeHnhe 59 
                      Dgy+WrKYGqK++ +++++rsYYrCt +   gC+++k v++ ++ +      k+ ++ Y g+H+++
  OMERI09G02350.1 197 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENGNssnsvvKLYNVDYFGKHTCK 262
                      9**************************99999*****99987643311111145578899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-161975IPR003657WRKY domain
SuperFamilySSF1182902.35E-142774IPR003657WRKY domain
SMARTSM007748.9E-133384IPR003657WRKY domain
PfamPF031061.1E-143576IPR003657WRKY domain
PROSITE profilePS5081114.2633571IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-21181262IPR003657WRKY domain
SuperFamilySSF1182906.41E-19190263IPR003657WRKY domain
SMARTSM007741.2E-27195263IPR003657WRKY domain
PfamPF031062.4E-20197262IPR003657WRKY domain
PROSITE profilePS5081115.043197237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNGVVNNGCI IGSFRACRKN AQHTCSVVTA TPDYDGYEWR KYGQKSISKT KHSRSYYKCT  60
NQKEQGCMAT KTMSANIEYF CCIDHRMIIQ EMKREHGLLI DLKNHIIPIL RFNNVQADHI  120
VHAFDDILCC SNGIISKIQA EVCDGGNSDP GIDKGNGRNN ALDNMKVFIE DGTVTKNKRR  180
KNAQHTGSVV TATPDYDGYE WRKYGQKSIS KTKHSRSYYR CTNQKGQGCM ATKTVQQIEN  240
GNSSNSVVKL YNVDYFGKHT CKVGNEMVCP DIVETDSPKY SSINDKYAST RLTNHSDDHQ  300
PKNEMKPENF FAVPDMSLFS ENMWDIMFED VTMNSTFSLE QEAKDSWIKH QQESTIHLWA  360
DELC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058290.0AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611479.10.0disease resistance protein RRS1 isoform X1
TrEMBLA0A0E0EQ240.0A0A0E0EQ24_9ORYZ; Uncharacterized protein
STRINGORUFI09G03410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1931588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.24e-17WRKY family protein