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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G18820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25177.1 Da PI: 5.9998 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 51 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++ a+++l+g OMERI08G18820.1 51 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 101 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.297 | 52 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-30 | 52 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 53 | 108 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-9 | 53 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-12 | 53 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-29 | 53 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.47E-26 | 53 | 101 | No hit | No description |
PRINTS | PR00367 | 1.3E-9 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEIGEGESCC GRRKQQQQQN ISSSKSRKCC PLRRSRKGCM KGKGGPENQR CPFRGVRQRT 60 WGKWVAEIRE PNRGARLWLG TFNTALDAAR AYDSAARALY GDCARLNLLL AAAAGTPPPA 120 AATPSVATPC STNDDSNNSS STTHQQQLTT MLQLDDDNYT LQQIQMASSS DQEDFETYVT 180 RLPKAEDFGL EGFQEVPLDV LDEAGGGISI WDLSICPADF MAAAATTTAK SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 53 | 115 | 6 | 69 | ATERF1 |
3gcc_A | 4e-15 | 53 | 115 | 6 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651102.1 | 1e-140 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 1e-141 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A0E0EP68 | 1e-171 | A0A0E0EP68_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G18700.1 | 1e-172 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 1e-29 | ERF family protein |
Publications ? help Back to Top | |||
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