PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G17470.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 389aa MW: 41341.1 Da PI: 5.2652

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G17470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3.1e-35	49	140	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++ll+ OMERI08G17470.1 49 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 133 9***************************************************************99.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k OMERI08G17470.1 134 EIHRRKV 140 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.1E-38	40	133	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-59	45	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.83E-35	46	138	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.1E-31	49	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	49	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	88	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	100	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MADQTAATAV VVVVGGAATA TGEPSPPPPP PAAEAAGVGQ QQRTVPTPFL TKTYQLVDDP 60 AVDDVISWND DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA 120 NDCFRRGERR LLCEIHRRKV TPPAPATTTT TAVAAAIPMA LPVTTTRDGS PVLSGEEQVI 180 SSSSSPEPPL VLPQAPSGSG SGGVASGDMG DENERLRREN AQLARELSQM RKLCNNILLL 240 MSKYASTQQL DAANASSAAG NNNNNCSGES AEAATPLPLP AVLDLMPSCP GAAAAAAAPA 300 SDNEEGMMSA KLFGVSIGRK RMRHDGGDDH AAAVKAEPMD GRPHGKDDHS AETQAWPIYR 360 PRPVYQPIRA CNGYEYDRAG SDQDGSNSS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MADQTAATAV VVVVGGAATA TGEPSPPPPP PAAEAAGVGQ QQRTVPTPFL TKTYQLVDDP  60
AVDDVISWND DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NDCFRRGERR LLCEIHRRKV TPPAPATTTT TAVAAAIPMA LPVTTTRDGS PVLSGEEQVI  180
SSSSSPEPPL VLPQAPSGSG SGGVASGDMG DENERLRREN AQLARELSQM RKLCNNILLL  240
MSKYASTQQL DAANASSAAG NNNNNCSGES AEAATPLPLP AVLDLMPSCP GAAAAAAAPA  300
SDNEEGMMSA KLFGVSIGRK RMRHDGGDDH AAAVKAEPMD GRPHGKDDHS AETQAWPIYR  360
PRPVYQPIRA CNGYEYDRAG SDQDGSNSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_A	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_B	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_C	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_D	2e-26	45	141	7	112	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406354	0.0	CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBank	CU406884	0.0	CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875859.1	0.0	heat stress transcription factor B-2b isoform X2
Swissprot	Q6Z9C8	0.0	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0E0ENN2	0.0	A0A0E0ENN2_9ORYZ; Uncharacterized protein
STRING	OMERI08G17210.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	1e-66	heat shock transcription factor B2A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]