PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G17270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 27628.4 Da    PI: 7.9045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G17270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1396140554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av YI +L
  OMERI08G17270.1  96 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVAYIAEL 140
                      889**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.40291140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1696155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1696151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1096140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-1296145No hitNo description
SMARTSM003531.2E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDELVLSPSS SSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTTTKRRGQ KPGPCSGGGG APPIGHVEAE RQRREKLNRR FCELRAAVPT  120
VSRMDKASLL ADAVAYIAEL RRRVERLEAA ARRAPLAPSA AAAAWAAGLG AGAIGRDDLV  180
VRMVGRDAAI LRLTTTAAAA RHAPARMMCA VRALNLAVQH ASVTRVGGAA TVQDVMVDDV  240
PAALQDEARL RAALLHTLQL AETT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-2089149262Transcription factor MYC2
5gnj_B1e-2089149262Transcription factor MYC2
5gnj_E1e-2089149262Transcription factor MYC2
5gnj_F1e-2089149262Transcription factor MYC2
5gnj_G1e-2089149262Transcription factor MYC2
5gnj_I1e-2089149262Transcription factor MYC2
5gnj_M1e-2089149262Transcription factor MYC2
5gnj_N1e-2089149262Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.11e-133transcription factor bHLH14
TrEMBLA0A0E0ENK80.0A0A0E0ENK8_9ORYZ; Uncharacterized protein
STRINGOMERI08G16980.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-16bHLH family protein