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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G17030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 271aa MW: 28249.2 Da PI: 4.4202 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.8 | 1.9e-23 | 182 | 226 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e OMERI08G17030.1 182 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 226 69************************************9998875 PP | |||||||
2 | QLQ | 54.2 | 4.2e-19 | 116 | 151 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k OMERI08G17030.1 116 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 151 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 115 | 151 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.4E-12 | 116 | 150 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 116 | 151 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.302 | 182 | 226 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 183 | 221 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GEKADREGEE 60 EEEGKEDVEE GGVCKDLVLV EDAVPVEDPE EAAATAALQE EMKALVESVP VGAGAAFTAM 120 QLQELEQQSR VYQYMAARVP VPTHLVFPIW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN 180 PEPEPGRCRR TDGKKWRCWR NAIANEKYCE RHMHRGRKRP VQLVVEDDEP DSTSGSKSAS 240 GKATEGGKKT DDKSSSSKKL AVAAPAAVES T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066400 | 0.0 | AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644678.1 | 1e-152 | growth-regulating factor 11 | ||||
Swissprot | Q6AWX8 | 1e-153 | GRF11_ORYSJ; Growth-regulating factor 11 | ||||
TrEMBL | A0A0E0ENF6 | 0.0 | A0A0E0ENF6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G10840.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | OMERI08G16750.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-29 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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