PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G16840.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 388aa    MW: 41045.6 Da    PI: 7.3593
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G16840.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-20209258255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+ +++g
  OMERI08G16840.5 209 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAAVRFKG 258
                      7********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32209267IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22209268IPR016177DNA-binding domain
PfamPF008471.8E-12209257IPR001471AP2/ERF domain
PROSITE profilePS5103225.198209266IPR001471AP2/ERF domain
SMARTSM003801.4E-35209272IPR001471AP2/ERF domain
PRINTSPR003675.9E-12210221IPR001471AP2/ERF domain
CDDcd000182.99E-13217267No hitNo description
PRINTSPR003675.9E-12232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDVNFTAIES NADDKEETVL GEMGFHSQHG GWALWREAGS RTEMHLGPPS VSPAYCFDFS  60
CSSASSAIKG TRVDRLREAS DTGHHRGRHK RARSSPPRHD DEPPPPPPLS PAVTGGAHGG  120
AGGAAWHSTV LAEDVESAVI VAALTHVISS TAAEVTTAVP PVTVAPQRAA TATMFGQQVM  180
QQPPRGFPPL PSSSGSAATA PEQQQPRRRY RGVRQRPWGK WAAEIRDPVK AARVWLGTFD  240
TAEDAARAYD AAAVRFKGSK AKVNFPDEVA GASIAAVQLP RHHQHHPPTS LPPLPVPAHL  300
RPHFSLAGGQ STTPAPAAAA VAAPPREEFP DLSSYAHILQ SGDLEYDFHA AVSAGLTTTA  360
GRSSSSSSLS MPRPSEDLDY KPPFGPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23210269666ATERF1
3gcc_A9e-23210269666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.16e-87PREDICTED: uncharacterized protein LOC102713488
TrEMBLA0A0E0ENC90.0A0A0E0ENC9_9ORYZ; Uncharacterized protein
STRINGORGLA08G0225800.11e-146(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-17related to AP2 6l