PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G15140.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 348aa    MW: 37732.4 Da    PI: 5.3211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G15140.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  OMERI08G15140.2  9 KRIENMNNRQVTFSKRRNGLIKKAYELSVLCDIDVALLVFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.086161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.80E-37275No hitNo description
SuperFamilySSF554555.62E-29284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRVKLPIKR IENMNNRQVT FSKRRNGLIK KAYELSVLCD IDVALLVFSP SGRLSHFSGR  60
RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQQ  120
EIYSSQQQLQ ITEDRLRMFE PDPAAFGTSG ENNLLSSHMA PFDATTAAMQ GADGTQMYVS  180
QADGMGTFGG DAAMWGPDGG ADPGHPMFSA SDPLIYLRDH NVYDANSQVA GLHGGVHLHR  240
AALHAHPHHV VPPHAGELLS TATVVAMIGG EDELLTISHA LRVPLLQHCL GPEDQYLSME  300
HGMVAAAAAA AQEPVEASTA SCSYVPSDEN SGTPVMAYDS NPPPANIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-18197194MEF2 CHIMERA
6byy_B6e-18197194MEF2 CHIMERA
6byy_C6e-18197194MEF2 CHIMERA
6byy_D6e-18197194MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9565040.0FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883256.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC22e-60AGL66_ARATH; Agamous-like MADS-box protein AGL66
SwissprotQ9LM462e-60AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0E0EMP90.0A0A0E0EMP9_9ORYZ; Uncharacterized protein
STRINGOGLUM08G20110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.19e-54AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]